Detail information of Os08g0430500_circ_g.8


General Information
CircRNA Name Os08g0430500_circ_g.8
ID in PlantcircBase osa_circ_037137
Alias Os08circ09400
Organism Oryza sativa
Position chr8: 20814280-20814399  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os08g0430500
Parent gene annotation 14-3-3 protein, Florigen receptor, Flowering (Os08t0430500-01);S
imilar to 14-3-3-like protein S94. (Os08t0430500-02);Similar to
14-3-3-like protein GF14-C. (Os08t0430500-03)
Parent gene strand -
Alternative splicing Os08g0430500_circ_g.1 Os08g0430500_circ_g.2 Os08g0430500_circ_g.3 Os08g0430500_circ_g.4 Os08g0430500_circ_g.5 Os08g0430500_circ_g.6 Os08g0430500_circ_g.7 Os08g0430500_circ_g.9
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os08t0430500-01:1
Os08t0430500-03:1
Os08t0430500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACATTCTTGTAAGCAACAGACAAGAGGTTGCGCTCCTCAACAGTGAGCTCTTCCACATgacc
ctcctccttctgttcaatggatgagacaatacgccaggaggcacggcgggcaccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCCTCCTCCTTCTGTTCAATGGATGAGACAATACGCCAGGAGGCACGGCGGGCACCAATCAC
ATTCTTGTAAGCAACAGACAAGAGGTTGCGCTCCTCAACAGTGAGCTCTTCCACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.562065
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015