Detail information of BGIOSGA035265_circ_g.1


General Information
CircRNA Name BGIOSGA035265_circ_g.1
ID in PlantcircBase osi_circ_009019
Alias Chr11:18731640_18734659(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13465473-13468460  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA035265
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA035265-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACATAATTCTTTCTCCACATGTGATCAGGGGCTCCAAGTTCAGGACTATTTTGGCAATTTC
TGCAAGCGTGTTCCTACTGACATTGATCTTCCATCGgaaggtcctcgaacaatggttggaattg
ccacatttgattccgctattcacttttacagccttaagcgtgctcagccaccaggtatgacacg
cataagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGGTCCTCGAACAATGGTTGGAATTGCCACATTTGATTCCGCTATTCACTTTTACAGCCTTA
AGCGTGCTCAGCCACCAGGTATGACACGCATAAGTTTTCTTGCATATCTTCTCACATAAAATTG
ACACCATTACTTTGAACTTTGGAAGATGAGAGATCTACTTACAACTTAGCAACTTAAATTTTCT
TTAAACTTGTCATTGGCTTCTTCATTGAATCCTTACCCTGATCTCTTTGTATTTTTTTGGGAAC
CTAAAATGATTTAATGAATGATAGTTATTTTTCTATGAATGGACATCGTTTTTTTATATATCTT
ATGTGATATTTGAAGACATTGCAATATGCATTCAGAGATATATATGCCATTCTAGTGCAGTTAA
GCTTGCCAGAGAAACCTTATTCTTGTTGAATGTTTTAAAATATTTTGCTTTTGCATGATTCTTT
GATATGTGTAATTTCAAACCAACCATTTGGCCTTTGTTTCCTTGCAGCCTTTGATGCTCATCGT
TCCTGATGTGCAAGATGTATATACACCTCTACAAAAGGATCTGATTCTTCCAGTTTCTGAGGTT
TGCATTCAAATGGATGAATTTTTGGCTATTTGTGCTTAACATATTTCTAGACATCTTACCATCC
TGTGGTTTTAGTGCCGTGAGAATCTGGAGCAGCTGCTGGAAAGCATCCCTAGCATGTTTGAGAA
TAATAGAGTTGCTGATTCTGCTTTCGGAGCAGCTATGAAGGTGCCACTTTGACCTTTCCACTAA
GATATTTTGTATTATTTCCATCTGCATGGTGTGCTATCTTTGTACACCAATTAAACACTCTTAT
ATACAGGAACCTATCTGTCTTGCATAGTTGCATTCACGGGGTTGAGTTTACAGTGGTTCTCACT
ATTGTATTTTATGTAGGCTGGTTTCCTGGCTATGAAATCAACTGGTGGAAAGCTACTTGTTTTT
CAATCAGGTACACCTAGTAAATTAGTCAAGACAATTCCAAGATGAACCTTATCTGCTCTTTTAG
TTGATCCACATTTTGATTAGTTGGTGAGCTTCAATTTGATTTGCTTGGATTCTGATTTTATAGC
TATTGCATTTCGAACATACACACACTCTAGTTTAGGAATTATCAAATGTTTCTACATTCTTGAT
CTAGAAGTACATAGCTGCTATTACTACCAGATAGGCCCAACAACTGCGAAGGACTTAGGATGCA
CTAGTAAAGCATAAAAACTTGTGTTGAGAAAACGCCCATATGACCCCTGCCCTAAAAAGTTGAA
CTATTACCCCCAAGATACATCGTGATGAGTACAGCATATGTCGAAGTGGAGCTTCATGATGGGG
ATGACAGGAGAGGACATGATGTAGACCTCTGTTCTCCTTCTCTCTCCCCCTTCACCACAAACAC
AACCTATTATTCTTCTCCTGACCCTGCACTGGTATGAGCCACAACACCAGTCATGCCATCTGAA
TGTGGAAAAACCACCTAAGACACTGCCTTGAAATAGCTGTTCTGCTGTTGTCTGTAACACCACA
AATACTTGCTTTTAAAATAGTCAGGAAGGTATCCTGAGTGCCATAGGAATTTTTCTATTTCTTT
TTTGCTGTCCATTTTGCAAATTTAACTCGGTGAGTGGAGGTAGATTATTTGGTAGTCTTTATCC
TGAAATTTAAAATATGTGCATGTAGTAATATCTCCATGCCTTTTCATGTTTTATGTGTCAGATA
TTCACTTCTGTGGGTGGTAGCTAAAAAGCTTTTCTTAATTTTGTATATAGTTTGTTTATGTCAG
AAAATATAAGTGTATTCCTTTTGGTTAACAACATTGTTCTGTTGACAGTGCTTCCATCACTTGG
TGTTGGTTCTTTATCTGCTAGGGAAGCTGAAGGTAGAGCAAATGTTTCCACTGGTGACAAGGTA
TAAGTGGAAATATACACAATTTGCATTATTTCGGTAGTTATGAAAACATGATCTAATTTAATGC
ATCTTTCTGATCAACATCACTTCATTGGAAATGTGTCAAATGATACACTAATAATTTTGTTATT
CCCAGGAACCCCACAAGCTTTTGCAGCCAGTTGACAAAACTCTCAAGACGATGGCACTAGAATT
TGCTGAATATCAGGTATTCTTTAGCTCTTAAGGTGCTTGATGTACATGTATTTTGGTGGTGACA
CATCATTGTTGTATTATCCCCTTTTTAGGTCTGTGTGGATGTGTTCCTTACTACACAATCATAT
GTTGATATTGCTTCGATATCTGTTGTTCCCAATACTACAGGAGGCCGGGTAAGTTTTCACCCTA
TGATTTTGTGACTTTTTTCTCAGAACTACCATCACCTTGATTTCATTATCAATTTCCCATAAAA
TATATTCATAATAGCTATAAAATCAATATTGCGTGAAAACACTTTCAAGTATTAATCTAGTGGT
ACAAGTTTTATACACTAAACGTACCTGTGAGTTAACTAGTCATTGGTCAAAAGCTTCAAAGGTT
AACTTTCTAAAATCAAAATAAACCTTATAAAAATGAAGGGAGTAGTTGTTAAAGGTTTTAGCAA
GGTGGGCACATGGTCTTATGTACTAGAGCATCAGATTTTTCATTTCATATCTATCAACTTTCAT
CTTTAGTTGTACCCTAAATTTATCAAATCAACAAGTACATTTAAGCCACATTGGTGCAGATCAT
TTCATTTTTTAACATGCAAATCCACAGGTTTACTACTACTATCCGTTTTCTGCTCGTTCGGATC
CGGCCAAGCTATTCAACGACCTTAGATGGAATATCAGTAGACCTCAGGGTTTCGAGGCTGTTAT
GCGTGTCAGATGCAGCCAGGTGGGATTAATGGCAGATCATTTTTCTTCAGTGCTTTACGTTACA
GTTTGGTCATGACATAATTCTTTCTCCACATGTGATCAGGGGCTCCAAGTTCAGGACTATTTTG
GCAATTTCTGCAAGCGTGTTCCTACTGACATTGATCTTCCATCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021