Plant Circular RNA Database

Detail information of TRIAE_CS42_6BL_TGACv1_499707_AA1589620_circ_g.1

			
						 General Information
					
						CircRNA Name
						TRIAE_CS42_6BL_TGACv1_499707_AA1589620_circ_g.1
					
						ID in PlantcircBase
						tae_circ_000032
					
						Alias
						6B:195302800|195307032
					
						Organism
						
							Triticum aestivum						
					
						Position
						
							chrTGACv1_scaffold_499707_6BL: 76349-80581  JBrowse»						
					
						Reference genome
						
							TGACv1.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							TRIAE_CS42_6BL_TGACv1_499707_AA1589620						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaves of seedlings
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						TRIAE_CS42_6BL_TGACv1_499707_AA1589620.1:11

General Information
CircRNA Name	TRIAE_CS42_6BL_TGACv1_499707_AA1589620_circ_g.1
ID in PlantcircBase	tae_circ_000032
Alias	6B:195302800\|195307032
Organism	Triticum aestivum
Position	chrTGACv1_scaffold_499707_6BL: 76349-80581 JBrowse»
Reference genome	TGACv1.38
Type	ue-circRNA
Identification method	CIRI
Parent gene	TRIAE_CS42_6BL_TGACv1_499707_AA1589620
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaves of seedlings
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	TRIAE_CS42_6BL_TGACv1_499707_AA1589620.1:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: TTGCGTTCAAGGCTAAAAGG
 R: TTTTTCCGGTTGATGAGGAC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: TTGCGTTCAAGGCTAAAAGG R: TTTTTCCGGTTGATGAGGAC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAGTTTTCTTAGTGGACAACTAATTCATTGTAACCCATCTAACCTGATTCTCTGGGATTGTAGC
TCGTCACCTTCGAGCCAGCACCCACCAGGCGGTGACcttgtcaaaacaggtagacaacgagcga
cactttgccccttttagccttgaacgcaaagacattctccaaattatccaacccctgtcttcac
aaagtccg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGTCAAAACAGGTAGACAACGAGCGACACTTTGCCCCTTTTAGCCTTGAACGCAAAGACATT
CTCCAAATTATCCAACCCCTGTCTTCACAAAGTCCGACCAATTAGTTGTTATCCCTTGATGAGT
GGGACCTTCTCCTTAGTGCACCCACATGCAAGTTTAGTCCACATGGTCCTGATGTTCAGAGTCT
GCAAGGAAGCAAGATTAATTCTCTCCGAGATGGACATATTTATTAGCATAGTTATTTAAGGAAA
TCCTAGGAATAGCAGATAGACATGGCTATTTTAATAAACAAAAATGAACAATGGATTTATGAAT
AAAGTAGAGCAGTAAATACTGAAGAATGAATTTATTTGAAAAAACAAAGTGAAGATGCTATCAT
GCTAATAAAGAACACTAACATCACAGTAAATATAAACTGATTAACTGAACATATTTTATTAACT
GAAAAACTGTTTAAGGCATGCCTGATCCCACTATCCAGTCGATAAACAAAGAATATTTACCCAC
GATCTTAAAAGAACTAACAACAAAATAGACATCAAAGATACAGAGACACAAAACTGGAATGCAT
CATTCTTATCATCCATTCTCGCTACATCTCTACAAAAAGTGAACAGGGCAAAGGAATATATATA
TATAGACCACGAGGGTCATAGTTTGCATAGGTACCTCCCAAGATATTTAGAGTAAGCCAATGCC
GTCTCATATGTCAAAGCCAATGCAAGCTACCTCATCGGCACATCCGGAACTGCAAAGCCCTCCT
AATATCGATCATACAAAGAGAAGGATCATTTGTAAGGTTACCATTTAACCTGTCAAGAAGTGAT
ATTTGAATGAAATGTTAGATTGGGAAACCCTTAAGCAAGAGTAAAACAAATGATTTTAAATAAT
AGGATAGTAGGTAAGATCATCTTAAATAAAAAAACTTTATAACCTAAAGAGAAACTTCTTAAAT
TATAACTTAAAGAGGAACCCTTAAGCAAGAGTACAAAAGCATGGATGTGTTAGGCACCACAATG
CTCAGACGACGGCATAACTTAAAGAGGAGACGTCATTGTTTTAATTATAGAAGTGGCGGAATAG
ACGGATTGATGTGGGAATTTGCAGGAGAAGCATTAATTGTTTGTCACATACATAGATGGCTAGA
GTAATTTGCAGATGCGTATGAGATAGCTACATACATGACCTCTCCTCTCCTCTTGGAAGAAGCA
AAGTTTCAGTTTTCTCCTCTCTGAATGTAAGTTGCAGCAAGGAAATTGGATGGGAGTGAACAAC
CAGAGCATGAGAGAGGGGGTGTGATACCTTCCGTGGAGCAACGGCGACCCGGGAAGAAGCAGAC
CCGGAGGAGCGTTGGTCTTCCCTCCTGTACGCGGTGCACCTGCGCGCATGAATCAGGGAGAGAG
TGAGAGAGGGGAGAGGCCAAATCCAATCGAACAGAACAGAGCAGAGCAGTGCGGAGGTGGGGAG
GAGAAGAGGGACCTGCCGTGAGAAGGAGCTCCAGGCCTTCCATGGTGTGTTGTGGGAGCTCCAT
GTCCATGGAGAAGAAGCACACGGTCACTCCATGGGTGCCGGCGCCGTGGCTGTGGATGTGGATC
CGGCGCCGGATCCGGCGCCGCCCTTCATGTGCCACTGCGGGATGTTTTTGCACTAAACAATGAA
CAACACAAGAAGGGAGCAGATGTGAAAAATGAATCAAACCAATGAGTAGACTGAATTAAGATAA
TGTTGTGTTTGAAGACAAAAATTATGTTTCTAAAATATTTATACTTTGGAAGCCTAGATCAGAA
TGAACTACACTGAAAAAAGAACAATTAGATATAGTAAATACCTTAATTTATGTTGAGATCACTT
TCCAACTCAGTTTCTTCATTGGCTGAAGGTAAGTACCAAGACTGAGAACTTTATAAGGCAAAAC
TCTATATTCTGCAGTCAAGTTTCGAAGATTCAATGCAGTTCTACTGGGTCTCTTGCAATACACT
TTTTGTAAACTTTGAGTTTTTCTAATGAAATGAACAGAGGTTCTTATGATCCGACTTACATGAC
TGCAGAACCTAGTGTTGTACAACTGTGAGTCATCAATGCTAAGCTGTATAAAAGAAGGAATATA
ATTTCGAAAAAAGGGTTATCGTGAATAACATGTCTTATCGTTTGAGCCATCCCTGTGGAGAGCA
CAAATGGAACTTGCTTGGAAAAAGTTGTATTTTTACTTATTTCTGTTTTAGCTGCTGCTTGTCG
TTTTTATTTGCCTGTCTTTTAAAGTTTTTCTACATGGCCGATCATTGCCAGAAAGTGATCATAT
ATGCAATATCTGATACACACTGCCATCAAGCTTAGAAGATTCAGTAAAGTTCTGCTGGATATAT
CTTGCAAAACACTATAGTAAACTTTTTTTTATGAACAGAGGTTCTTAAGACCCACTTTACATGA
TCGACTGATTGCAATATCTACTGTTTTAGGAAGAGAAATAACTCGGAGTTCATACCTTTCAATT
ACAAAAGTCATGCTCAGTGATGGTTCTACAATGAACAAACTGAGGGGAGTCATTCCTCTTGATC
AAGGCCTGCATTCTGGGAAGATAGGCAGCCATGTCGTCATAATGGGAGAGACACGCATGTGCTG
ACACATCCCACGACAATACCCAGTCTCATCTGCTGCCCTCTAATTATTGTCCAGCTTGTTGCAT
TATCAGAAAAGTAAATCCTTCAATAAATAGAAGTAAACATTATTTTCAGCAGTAGAAAACAAGT
TGCTTCTCATGATTATTATTTCGGAAGAATAATAGCAAGACAGTTTCCAAAACATATGCTTACA
GGTCGAGAAAAAGGATATAAGAGAAAGTGGAACCACAAGTCTCCTTTCCGGTATCTCATCCATA
TTTAAGAGCTGCATCTAAGAATCTACATATTCAGCAAACTCTGTCAACACCACAAAATTAAGTC
GTAATAAAGAAGCAATCTATCTGAGAAAGAAAATTTAAGATGCCGGCCTATTAATTTGAGCAGT
TGCGGACATTTCAGATTTCAGGGAAGTCAACCATGAGATACCACAACTGGGCAGATGTACATTT
TTCGCTTATAGAAGCGCCCGTCCACGTCATTACGATACAACAAGCGACGACAGTCCACCACTAA
GTGTCGCTACGGTGGCTGCTCGGGCACACTCCACCTAAACAACCACCCAAAAGGATCACTGAAA
TCCCAATTCGGCAGCCCAGCCAATGGCATGCTTTGGCTCAACTACTCAAAGGGTTCACCAGATT
AGATATGTTTAATTCAGTGTCAAAGTAGAATATCTTAGCTAAGCGACACAAAAAATTACATAAC
ATGACGTGTTTAGTTCTGCAAACTCAGTTCATCAACACATCACTGATAGCAGCAGTCCTAAAGG
CAAGAACAAATACCAATGTTTTCAACATGATGCTGTATACGGAAAATGGCTTGATTTGCTAGTG
TTCGAACATCAATAACTCGATAGTCCAAGCGTGTGTCCTGACCAACATGGACAAGTGGCACTCC
CTTCTGAAAAACAACAAGATACTATTAGCTGAACCCAGATATCATCATCGGAGATTGGAGCAAC
AATCTGTATCCTCCTCCTTTATGCATTCAAAGAGGAGGCAAGCAAATACGCAGATTGTTCAGAC
TAACATACTGATTCAGCTATTGCAAACTCCTCAGCACTCCGTCCGGCATCCTCCACGCTGATCG
GTAGCTTTAGGTCAGCCCTGTTGATGCAGTAGAGCTTCCTTATAAACATTGCATGCTTGCAAAC
TTAAAAGCAAACTTCATTCAGATAGCCTGAAACTACCGAAAATAAAGCTGCAGTACTGATATAT
TATCCTAAAGATTCAGGCAGGCTTCATAAATTCACTCATTTTAGTTATCTGTACTTCCCTGAAG
GTAGAAAAGCAAGGAAATTGGTCGTTGATGGTGCCAACAACTAATATATTACCCTAAAGATTCA
GGCAGGCTTTATGTCATTTTAGTTATGTGTACTTCTCTGAAGGTTTCTAATCACATAGAAAAGC
AAGCAATTGGTTGTTGACGGTGCCAACATTAGAACGGCTGTATGCTTGTGCTAGTTAGCATTTT
TCCGGTTGATGAGGACTTCCAATAGGTGTCTTTTTTTCAGTTTTCTTAGTGGACAACTAATTCA
TTGTAACCCATCTAACCTGATTCTCTGGGATTGTAGCTCGTCACCTTCGAGCCAGCACCCACCA
GGCGGTGAC
						
					

			
		

Sequences
Splice junction sequence	CAGTTTTCTTAGTGGACAACTAATTCATTGTAACCCATCTAACCTGATTCTCTGGGATTGTAGC TCGTCACCTTCGAGCCAGCACCCACCAGGCGGTGACcttgtcaaaacaggtagacaacgagcga cactttgccccttttagccttgaacgcaaagacattctccaaattatccaacccctgtcttcac aaagtccg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGTCAAAACAGGTAGACAACGAGCGACACTTTGCCCCTTTTAGCCTTGAACGCAAAGACATT CTCCAAATTATCCAACCCCTGTCTTCACAAAGTCCGACCAATTAGTTGTTATCCCTTGATGAGT GGGACCTTCTCCTTAGTGCACCCACATGCAAGTTTAGTCCACATGGTCCTGATGTTCAGAGTCT GCAAGGAAGCAAGATTAATTCTCTCCGAGATGGACATATTTATTAGCATAGTTATTTAAGGAAA TCCTAGGAATAGCAGATAGACATGGCTATTTTAATAAACAAAAATGAACAATGGATTTATGAAT AAAGTAGAGCAGTAAATACTGAAGAATGAATTTATTTGAAAAAACAAAGTGAAGATGCTATCAT GCTAATAAAGAACACTAACATCACAGTAAATATAAACTGATTAACTGAACATATTTTATTAACT GAAAAACTGTTTAAGGCATGCCTGATCCCACTATCCAGTCGATAAACAAAGAATATTTACCCAC GATCTTAAAAGAACTAACAACAAAATAGACATCAAAGATACAGAGACACAAAACTGGAATGCAT CATTCTTATCATCCATTCTCGCTACATCTCTACAAAAAGTGAACAGGGCAAAGGAATATATATA TATAGACCACGAGGGTCATAGTTTGCATAGGTACCTCCCAAGATATTTAGAGTAAGCCAATGCC GTCTCATATGTCAAAGCCAATGCAAGCTACCTCATCGGCACATCCGGAACTGCAAAGCCCTCCT AATATCGATCATACAAAGAGAAGGATCATTTGTAAGGTTACCATTTAACCTGTCAAGAAGTGAT ATTTGAATGAAATGTTAGATTGGGAAACCCTTAAGCAAGAGTAAAACAAATGATTTTAAATAAT AGGATAGTAGGTAAGATCATCTTAAATAAAAAAACTTTATAACCTAAAGAGAAACTTCTTAAAT TATAACTTAAAGAGGAACCCTTAAGCAAGAGTACAAAAGCATGGATGTGTTAGGCACCACAATG CTCAGACGACGGCATAACTTAAAGAGGAGACGTCATTGTTTTAATTATAGAAGTGGCGGAATAG ACGGATTGATGTGGGAATTTGCAGGAGAAGCATTAATTGTTTGTCACATACATAGATGGCTAGA GTAATTTGCAGATGCGTATGAGATAGCTACATACATGACCTCTCCTCTCCTCTTGGAAGAAGCA AAGTTTCAGTTTTCTCCTCTCTGAATGTAAGTTGCAGCAAGGAAATTGGATGGGAGTGAACAAC CAGAGCATGAGAGAGGGGGTGTGATACCTTCCGTGGAGCAACGGCGACCCGGGAAGAAGCAGAC CCGGAGGAGCGTTGGTCTTCCCTCCTGTACGCGGTGCACCTGCGCGCATGAATCAGGGAGAGAG TGAGAGAGGGGAGAGGCCAAATCCAATCGAACAGAACAGAGCAGAGCAGTGCGGAGGTGGGGAG GAGAAGAGGGACCTGCCGTGAGAAGGAGCTCCAGGCCTTCCATGGTGTGTTGTGGGAGCTCCAT GTCCATGGAGAAGAAGCACACGGTCACTCCATGGGTGCCGGCGCCGTGGCTGTGGATGTGGATC CGGCGCCGGATCCGGCGCCGCCCTTCATGTGCCACTGCGGGATGTTTTTGCACTAAACAATGAA CAACACAAGAAGGGAGCAGATGTGAAAAATGAATCAAACCAATGAGTAGACTGAATTAAGATAA TGTTGTGTTTGAAGACAAAAATTATGTTTCTAAAATATTTATACTTTGGAAGCCTAGATCAGAA TGAACTACACTGAAAAAAGAACAATTAGATATAGTAAATACCTTAATTTATGTTGAGATCACTT TCCAACTCAGTTTCTTCATTGGCTGAAGGTAAGTACCAAGACTGAGAACTTTATAAGGCAAAAC TCTATATTCTGCAGTCAAGTTTCGAAGATTCAATGCAGTTCTACTGGGTCTCTTGCAATACACT TTTTGTAAACTTTGAGTTTTTCTAATGAAATGAACAGAGGTTCTTATGATCCGACTTACATGAC TGCAGAACCTAGTGTTGTACAACTGTGAGTCATCAATGCTAAGCTGTATAAAAGAAGGAATATA ATTTCGAAAAAAGGGTTATCGTGAATAACATGTCTTATCGTTTGAGCCATCCCTGTGGAGAGCA CAAATGGAACTTGCTTGGAAAAAGTTGTATTTTTACTTATTTCTGTTTTAGCTGCTGCTTGTCG TTTTTATTTGCCTGTCTTTTAAAGTTTTTCTACATGGCCGATCATTGCCAGAAAGTGATCATAT ATGCAATATCTGATACACACTGCCATCAAGCTTAGAAGATTCAGTAAAGTTCTGCTGGATATAT CTTGCAAAACACTATAGTAAACTTTTTTTTATGAACAGAGGTTCTTAAGACCCACTTTACATGA TCGACTGATTGCAATATCTACTGTTTTAGGAAGAGAAATAACTCGGAGTTCATACCTTTCAATT ACAAAAGTCATGCTCAGTGATGGTTCTACAATGAACAAACTGAGGGGAGTCATTCCTCTTGATC AAGGCCTGCATTCTGGGAAGATAGGCAGCCATGTCGTCATAATGGGAGAGACACGCATGTGCTG ACACATCCCACGACAATACCCAGTCTCATCTGCTGCCCTCTAATTATTGTCCAGCTTGTTGCAT TATCAGAAAAGTAAATCCTTCAATAAATAGAAGTAAACATTATTTTCAGCAGTAGAAAACAAGT TGCTTCTCATGATTATTATTTCGGAAGAATAATAGCAAGACAGTTTCCAAAACATATGCTTACA GGTCGAGAAAAAGGATATAAGAGAAAGTGGAACCACAAGTCTCCTTTCCGGTATCTCATCCATA TTTAAGAGCTGCATCTAAGAATCTACATATTCAGCAAACTCTGTCAACACCACAAAATTAAGTC GTAATAAAGAAGCAATCTATCTGAGAAAGAAAATTTAAGATGCCGGCCTATTAATTTGAGCAGT TGCGGACATTTCAGATTTCAGGGAAGTCAACCATGAGATACCACAACTGGGCAGATGTACATTT TTCGCTTATAGAAGCGCCCGTCCACGTCATTACGATACAACAAGCGACGACAGTCCACCACTAA GTGTCGCTACGGTGGCTGCTCGGGCACACTCCACCTAAACAACCACCCAAAAGGATCACTGAAA TCCCAATTCGGCAGCCCAGCCAATGGCATGCTTTGGCTCAACTACTCAAAGGGTTCACCAGATT AGATATGTTTAATTCAGTGTCAAAGTAGAATATCTTAGCTAAGCGACACAAAAAATTACATAAC ATGACGTGTTTAGTTCTGCAAACTCAGTTCATCAACACATCACTGATAGCAGCAGTCCTAAAGG CAAGAACAAATACCAATGTTTTCAACATGATGCTGTATACGGAAAATGGCTTGATTTGCTAGTG TTCGAACATCAATAACTCGATAGTCCAAGCGTGTGTCCTGACCAACATGGACAAGTGGCACTCC CTTCTGAAAAACAACAAGATACTATTAGCTGAACCCAGATATCATCATCGGAGATTGGAGCAAC AATCTGTATCCTCCTCCTTTATGCATTCAAAGAGGAGGCAAGCAAATACGCAGATTGTTCAGAC TAACATACTGATTCAGCTATTGCAAACTCCTCAGCACTCCGTCCGGCATCCTCCACGCTGATCG GTAGCTTTAGGTCAGCCCTGTTGATGCAGTAGAGCTTCCTTATAAACATTGCATGCTTGCAAAC TTAAAAGCAAACTTCATTCAGATAGCCTGAAACTACCGAAAATAAAGCTGCAGTACTGATATAT TATCCTAAAGATTCAGGCAGGCTTCATAAATTCACTCATTTTAGTTATCTGTACTTCCCTGAAG GTAGAAAAGCAAGGAAATTGGTCGTTGATGGTGCCAACAACTAATATATTACCCTAAAGATTCA GGCAGGCTTTATGTCATTTTAGTTATGTGTACTTCTCTGAAGGTTTCTAATCACATAGAAAAGC AAGCAATTGGTTGTTGACGGTGCCAACATTAGAACGGCTGTATGCTTGTGCTAGTTAGCATTTT TCCGGTTGATGAGGACTTCCAATAGGTGTCTTTTTTTCAGTTTTCTTAGTGGACAACTAATTCA TTGTAACCCATCTAACCTGATTCTCTGGGATTGTAGCTCGTCACCTTCGAGCCAGCACCCACCA GGCGGTGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.333023175

Conservation Information
Conserved circRNAs	NA
PMCS	0.333023175

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Wang et al., 2017

circRNA

Detail information of TRIAE_CS42_6BL_TGACv1_499707_AA1589620_circ_g.1

Address

Any questions?

Supported by