Detail information of BGIOSGA032735_circ_g.1


General Information
CircRNA Name BGIOSGA032735_circ_g.1
ID in PlantcircBase osi_circ_008869
Alias Chr10:11709244_11709718(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 8344684-8345158  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032735
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   CT-TC
Number of exons covered BGIOSGA032735-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTGTTGTAGTATTTTTCTATCTGTCCCAAATGTTTCAGTTCCTAGTTCAACCAAGTATTTT
GAGTTTGTTATATGATTGATGAGCTCATTGAACTCAtgtaagttacttttcctatttccttcat
aatgttaatttgatgggacctttatcaaatagaggtgaaatacagattgtttcaagcgtctgat
tatacatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAAGTTACTTTTCCTATTTCCTTCATAATGTTAATTTGATGGGACCTTTATCAAATAGAGGT
GAAATACAGATTGTTTCAAGCGTCTGATTATACATTACAATGCCTTTACTTTGCTAGTATCTTT
AACATATTGTATTGTTCATGGAATTTGCTAATCTAATGTTTTCGTAATTTAATTGGTCTGCTAG
GGCTTGTCGCCATGGTGCTATATAACATAAGTTTTGTTTTGCACCAGATTGAATCTGTAATTGA
CAACACCTACTTATTAAGGACACGGATTTTGACATTTTGTTTCCATTATGTTGAATTTTGACCC
ATAAATTGTTATGCCATTAATTGATCACTTTTTCAATTTTATCTCATTTATATCTTATGTGTTG
TAGTATTTTTCTATCTGTCCCAAATGTTTCAGTTCCTAGTTCAACCAAGTATTTTGAGTTTGTT
ATATGATTGATGAGCTCATTGAACTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021