Detail information of BGIOSGA003604_circ_ig.3


General Information
CircRNA Name BGIOSGA003604_circ_ig.3
ID in PlantcircBase osi_circ_009534
Alias Chr01:18446145_18446383(MH63RS2), Chr01:18446145_18446383(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19301922-19302160  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003604_circ_ig.1 BGIOSGA003604_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATAGGGGATAAAAG
CACTACACCTAGAAATAGGAATCAACAAGAGAAAAAccaaattagtaagggaaacccacgctta
gggaaggtgaggtgaactaacaactccttctgtcgtgtatcctcgactgacgcggcctcggatg
cttcaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGTGAACTAACAACTCCTTCTGTCGT
GTATCCTCGACTGACGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTA
CACCTACAGGATAGGTTCTGTATTACAGGCTAATCCTACTCTACTAGTACTAATAGGTAGCATA
GGGGATAAAAGCACTACACCTAGAAATAGGAATCAACAAGAGAAAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021