Detail information of BGIOSGA022624_circ_g.2


General Information
CircRNA Name BGIOSGA022624_circ_g.2
ID in PlantcircBase osi_circ_006622
Alias 6:8691818|8692352
Organism Oryza sativa ssp. indica
Position chr6: 8691818-8692352  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA022624
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA022624_circ_g.1 BGIOSGA022624_circ_g.3 BGIOSGA022624_circ_g.4 BGIOSGA022624_circ_g.5 BGIOSGA022624_circ_g.6 BGIOSGA022624_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA022624-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCTCCAAAAAGTAAACTAGGTAGAATAGCTCTGGTTGACACCATTGCTAAGCAGATACGTAA
ACGGATGAAAGTGCGACTTCCTAACCTATTGAGTGGattaatgaatatgctgggcacaatgatg
caatactgctagttgtgatacctgcaatgcaagcagctgatgttgcgtcatctcgagctcttag
gctggcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTAATGAATATGCTGGGCACAATGATGCAATACTGCTAGTTGTGATACCTGCAATGCAAGCAG
CTGATGTTGCGTCATCTCGAGCTCTTAGGCTGGCCAAGGATATTGATGCAGATGGTCTGTCTTT
CAGGAGTAAATATCTTCTATAGTACCATTCATTCATTTCATCGCAAGTGATATTTACCCATTTG
TTGCAGGCACCAGAACTGTAGGTGTGATAAGTAAAGTTGATCAAGCAGAAGGAGATGCAAAAAC
TATAGCTTGTGTTCAGGCCCTTCTGTCGAATAAGGGCCCAAAAAACCTTCCAGATATCGAGTGG
GTTGCTCTGATAGGACAATCAGTTGCAATTGCGTCAGCTCAAGCAGCAGGTTCTGAAAACTCAC
TAGAAACAGCATGGAATGCTGAAGCTGAAACCCTCAGATCCATCTTAACTGGAGCTCCAAAAAG
TAAACTAGGTAGAATAGCTCTGGTTGACACCATTGCTAAGCAGATACGTAAACGGATGAAAGTG
CGACTTCCTAACCTATTGAGTGG
Conservation Information
Conserved circRNAs osa_circ_030385*
PMCS
Functional Information
Coding potential Y
Potential coding position 8691873-8691854(+)
Potential amino acid sequence MQAADVASSRALRLAKDIDADGTRTVGVISKVDQAEGDAKTIACVQALLSNKGPKNLPDIEWVA
LIGQSVAIASAQAAGSENSLETAWNAEAETLRSILTGAPKSKLGRIALVDTIAKQIRKRMKVRL
PNLLSGLMNMLGTMMQYC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021