Detail information of Os04g0291100_circ_g.3


General Information
CircRNA Name Os04g0291100_circ_g.3
ID in PlantcircBase osa_circ_023334
Alias Os_ciR2683
Organism Oryza sativa
Position chr4: 12671773-12672135  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0291100
Parent gene annotation Similar to Short-chain dehydrogenase Tic32. (Os04t0291100-01);Hy
pothetical conserved gene. (Os04t0291100-02)
Parent gene strand +
Alternative splicing NA
Support reads 5/2
Tissues root/root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0291100-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAAGCTATGCAGAGGATGGATGTCAAAGCCCTGTTATTTTTGTTATGGAGCTGTTCTGTGAA
TAGATGATATCAATGATCGCATTACTATTTCAAAAAgttccacttttcttcttgttttccttta
agctcgtatttggaacaactggtggttcacactaactcttgtttatttaattgtacacactgtt
tgtcctca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 363
Transcript exons: 12671773-12672135
GTTCCACTTTTCTTCTTGTTTTCCTTTAAGCTCGTATTTGGAACAACTGGTGGTTCACACTAAC
TCTTGTTTATTTAATTGTACACACTGTTTGTCCTCAAAATTACACAATTTTGTAATCTTGTAAA
ATGGAAAAGAAATTGTAGTAGGCTATTTTTCTTGAAATTACTAACTGTAATATGTTAGACATGC
TGTTAACTAAATCATGTAGATCTTTGGCTGAGACAGTAATATGAAGTTATCACAAAATAGATCT
CATAATAGCAAAGCTATGCAGAGGATGGATGTCAAAGCCCTGTTATTTTTGTTATGGAGCTGTT
CTGTGAATAGATGATATCAATGATCGCATTACTATTTCAAAAA

Genomic sequence GTTCCACTTTTCTTCTTGTTTTCCTTTAAGCTCGTATTTGGAACAACTGGTGGTTCACACTAAC
TCTTGTTTATTTAATTGTACACACTGTTTGTCCTCAAAATTACACAATTTTGTAATCTTGTAAA
ATGGAAAAGAAATTGTAGTAGGCTATTTTTCTTGAAATTACTAACTGTAATATGTTAGACATGC
TGTTAACTAAATCATGTAGATCTTTGGCTGAGACAGTAATATGAAGTTATCACAAAATAGATCT
CATAATAGCAAAGCTATGCAGAGGATGGATGTCAAAGCCCTGTTATTTTTGTTATGGAGCTGTT
CTGTGAATAGATGATATCAATGATCGCATTACTATTTCAAAAA
Conservation Information
Conserved circRNAs osi_circ_014207
PMCS 0.23625326
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017