Detail information of Os06g0308000_circ_g.8


General Information
CircRNA Name Os06g0308000_circ_g.8
ID in PlantcircBase osa_circ_042315
Alias NA
Organism Oryza sativa
Position chr6: 11681795-11681956  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI-long
Parent gene Os06g0308000
Parent gene annotation Similar to Trigger factor-like protein. (Os06t0308000-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0308000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGAAGCCTTGTGCCAACTCATTGCCTACCGATGGAATGTAAAGTTTGCTTTTTATTTATAG
CACAATAAAGAGATATGtacattagaccatgaatctagtgtcaaagacagctggtgtgaaaatt
ttgctgagttactttggttctactcgtacagata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 162
Transcript exons: 11681795-11681956
TACATTAGACCATGAATCTAGTGTCAAAGACAGCTGGTGTGAAAATTTTGCTGAGTTACTTTGG
TTCTACTCGTACAGATAAAATGAAGCCTTGTGCCAACTCATTGCCTACCGATGGAATGTAAAGT
TTGCTTTTTATTTATAGCACAATAAAGAGATATG

Genomic sequence TACATTAGACCATGAATCTAGTGTCAAAGACAGCTGGTGTGAAAATTTTGCTGAGTTACTTTGG
TTCTACTCGTACAGATAAAATGAAGCCTTGTGCCAACTCATTGCCTACCGATGGAATGTAAAGT
TTGCTTTTTATTTATAGCACAATAAAGAGATATG
Conservation Information
Conserved circRNAs NA
PMCS 0.12654321
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study