Detail information of AT2G02160_circ_g.6


General Information
CircRNA Name AT2G02160_circ_g.6
ID in PlantcircBase ath_circ_012547
Alias NA
Organism Arabidpsis thaliana
Position chr2: 555398-555758  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G02160
Parent gene annotation Zinc finger CCCH domain-containing protein 17
Parent gene strand -
Alternative splicing AT2G02160_circ_g.5 AT2G02160_circ_g.7
Support reads 4
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAATCGGGTGAAAGAAACTTGAGATCTCAAATCCAAAACCCTAATTGAAGCAGAAACTGGAT
AAGATCTAAGCGAAACAATAATCAAAAATCAATTACtaagaatcgttcttcagcataaacatac
acatcgagcaaaaatcatattcacagaacatgaaaatctcctttatcagaacatccttataaag
ctttgtat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 361
Transcript exons: 555398-555758
TAAGAATCGTTCTTCAGCATAAACATACACATCGAGCAAAAATCATATTCACAGAACATGAAAA
TCTCCTTTATCAGAACATCCTTATAAAGCTTTGTATATGTAATTTTCAATCTAGCTAACAAGAA
GCCCTAAGAAACAACAATACTTAGAATCACGAGGTTCGAAATCACCAGATCTAAATCTCGCACC
AAAATTAAGCAGATGGAGAAGTGAAGTATGTATAGATAGCTTCGAGGGACACAAAAACACAGAG
AAACTTGAAATCGGGTGAAAGAAACTTGAGATCTCAAATCCAAAACCCTAATTGAAGCAGAAAC
TGGATAAGATCTAAGCGAAACAATAATCAAAAATCAATTAC

Genomic sequence TAAGAATCGTTCTTCAGCATAAACATACACATCGAGCAAAAATCATATTCACAGAACATGAAAA
TCTCCTTTATCAGAACATCCTTATAAAGCTTTGTATATGTAATTTTCAATCTAGCTAACAAGAA
GCCCTAAGAAACAACAATACTTAGAATCACGAGGTTCGAAATCACCAGATCTAAATCTCGCACC
AAAATTAAGCAGATGGAGAAGTGAAGTATGTATAGATAGCTTCGAGGGACACAAAAACACAGAG
AAACTTGAAATCGGGTGAAAGAAACTTGAGATCTCAAATCCAAAACCCTAATTGAAGCAGAAAC
TGGATAAGATCTAAGCGAAACAATAATCAAAAATCAATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.567168551
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017