Detail information of PGSC0003DMG400015225_circ_igg.2


General Information
CircRNA Name PGSC0003DMG400015225_circ_igg.2
ID in PlantcircBase stu_circ_000458
Alias chr03:51582566|51587136
Organism Solanum tuberosum
Position chr3: 51482567-51487136  JBrowse»
Reference genome 3.0.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400046688_circ_igg.1 PGSC0003DMG400046688_circ_igg.2 PGSC0003DMG400015225_circ_igg.1 PGSC0003DMG400015225_circ_igg.3 PGSC0003DMG400015225_circ_ig.1 PGSC0003DMG400015225_circ_ig.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGATTATGGATTCCATTGTATCATGTTATCGGGACGCTTGGAGTTCCTGGGAAGAGGTACCT
GTCTATGACAGAGAACAAATGTGGAATCACTTCAAGcgcagtgtgcatggtatccccaacatga
atatcatatattttgtaattttgagataaacactgcttttttgcttaacaaaaccttggagagt
gctcggga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCAGTGTGCATGGTATCCCCAACATGAATATCATATATTTTGTAATTTTGAGATAAACACTGC
TTTTTTGCTTAACAAAACCTTGGAGAGTGCTCGGGATATGAATGAGAAGCCCGATTGGATGCTA
GAAGGTTTATGGGCTAGACTTATTGAAAAGAGGACCACTGAGAAATTTCAAAAGCCGAGCATCC
AAGCAAAGGCACCAGGGACTCATCAAATGAAATTGGTAACTTGTTTATTAAATTTTCCTTGATT
TTAACTAAATGCTGTTGAACTTTTAACTAACTTATATTTTTTGTTTGCAGGAGAAGAAAAAAAG
GAGAACTATGACTTATGATGAGGTCTCAAGGGAGAAACATGTGAAAATTAAAAAGAATGGTCAT
AATACTTTGGTGGAGCCACATGTTGAGAGGAAAAATGTAAGATCTTAGCTTCAGAGCTATTATA
TTTTCCCTAACATGAATTTGTTTATATATTGCCTATCAGTCTTGTTTCAGGTTGGGTATAAAAA
AGGCTTGGATGAATGGCGTCAAAGTCAACCTACTTCTGAGGATGATTGCTTAACCCAATCACCA
GAAGATGATGAAGCTTCAATATTGTCAAAGAAGATTGGTGGATTAAAGAAAGGTAAAGCACGCG
TCCTTGGATCAGAGCATTGCATAGGCTGTGTCACGTACGGATTTGCTTCTGCTTCTTTAAGGTC
TGGGCAGAATCAGGAAGAGATAGATTCAGAGATAAAATCATTGCGGATACAAGTACAAGAGCTA
TTGACAAAGCAAAAAGCAGACCGTTTAAAACTTGATGGACTGGAGAATCTAGTGGTTCAGCTCA
TAGACAATTGCCGATCTGAAGAGTCTGACAATGATGAGTCTGATGGGGAAACATAGTTTGTTGT
GCTTTTGATGTTGAAATATTTACTTGTTTGATTTCGTTTGGATATTACCTGAATGGGTTCTGAA
TGTCTAGACTGGCTTTTGGATCTTACTTGAGTGGTCTTTGGATGTTTTTGGACTTGATTTTGTA
TGCTACTTGAATGGTGTTTGGATGTTTTAGTTATAAACCTTTATGTTTACTTGTTGGAATTTTA
GGAGGTTTGATTGTTGGGCACAAACCAAAAGGAATGAAATAATTTTTGAAATTTGTAGTCTAAA
ATATATCGATACATATTTATGTGGCTAAAATATCATATCATTAAGCATAAAACAGTAAGCAGCA
AAAAAAGAAAGTGTATCATGTAAGGCACAGTCGGGTTGCTCACGCAGCGGATCACTCTCTCAGA
GAGAGAGAGGGGTGTGAAAGTAATAGCCTTATGTTATGGCCGCCCCCGACTTACGGTCTTTACG
CTACTACTATTGTGATGTGAGCGGTTCAAATTGGTTGAATCTTTCTCAATCATCCTGGCCGGAA
CTTGTATGCAGCACTTGTACGGAGCATAAAGGCTTGGAACTCAGATAAAATAACGTGTTATGTG
AACATTAATAGTTAATCATTTGTCAAATTTACTTCAATAAGCTCGAACTTTTTAGGTTTAAATC
TGATTTACCAATAAGAAATATTCAAATCTAGTTGCAAAAATGGCAAAACACCATAGCGGAAAAC
TTATCCCGCTCAATGTTTATATGAAATGTATCAAATAGCAAATTGTACTGAGGCCGAAGCACCT
GCTCAGTTTAGTGTTTTCTCTCCACTCCACTGCATCAATTAGGAACAGAGGAAGAAGAATAAGC
CATTTCAGAAGAAGAACACCAAACAAATAAATAAATAAAATCTTTTCGACATTCCGATGAAAAA
ATTGCGCGAAAATCGACGCTGCATTTATAAGTCATTACCGACGCAGATTTCCGACCACAGCCGT
CGCAAAACTTAAATATATATTGGGAACAAAACCCTCATTTTTTCTCAATTCTCACTTCCTCGCC
TCACTTTTTTTCTCTACTCTTTCCTTGGCGATTCACCTCTTAGGACAGCCAAATAAAGCCGTCC
ATTAGCGCCACCGTTGACGGCAGCACCACTGTTCAGTTGAGGTATGTGGATTTTTTCCTTCTTC
CACAGTTTTTCTCTAGGTTTTCTATTTGTATGAGATTTTGAATAGATCTGGATAGATATCACCA
TTTTCTTCAAAGGTCCGTGTAGAATTTTGCTTTGATTAAGTTTTGTTCTTCTTTCTGGGTGTTG
CTCATATGAAAATATTAACTTGAATCGTTATAGTCTCTCTGCTTTGACTAATTAACTTTCGGAC
TTAGTTTATTGTATTTAGCACTAATGATTTTGGAGCTTTGTTAATTTTATCTAACACAAAAGAT
ATAACCATCTATGTATACTTTTCGGGGGATTGAGCAGAAGATGTTTGATTACCCGGAAGGGTAG
CTGAGTGCTTGTTCAAAATTCCCAGCTTATTTCTGATCAAATGTATCTACGAAGAACTTACCCT
TCAGTTTTTACTTGTAGCTCAAATAAACAAGATTATGAGTGTGAACTTCTTCCTGCCTTCTTAC
CCAAGAGCTCTGATTCCGCTTAAATAAAAGCAGCTCTTCTTCCTTACTCGAAATTCACAAGATT
GAATGGCCAATTCTCCTCCGAACCCTCGTCTCTTCCTCCTGAAGTATGGAAAAAGGAAGAAAAA
GCAGTAGGAAGATACATCCATGCCAAACAAGAATGGAGATTCAATTGATGAACATAAAACAAGC
GAGAAATAATTACTTGATGAAGTTGAAACGAGCAATATAAAAAATTTAATGATCAATTTAAAGC
AAGGGAAAAATTAATATGTTAGTTTTTTTATGTTCTTTAGTCATATAATAGGTTGAAGAAGTAA
CAACTTTATTAGTATTCTTAAATTATTATTATTTTTAACTATGCTTGTATTATTCAGATGGCAT
CTCAGGAAAACGATCGTCCACAAAGTGCTAGTGCGGTGAAACGTAAATCTAAGGGAAAGAAAAA
AGTTTCTGAGACTACAGGTTACACTACCTCTCTACTTATATGCCTCTTACATGTATACAGGAAG
TCTTTTTGAATAACAATCATTTGAAATGATCATTAAAATCATGCATGACCACAACCTTTAAATC
AACATCTTTTCGATAAATGAAATGTTTTATTCATGCATGTCATATGAGAAATCATAAATTACAA
CGCAAAATGAAAAACTATAGTCAATAGAACTTCTATAACGCATAGTGAAAATAGTCAACCAAGA
CAGGCTCCAGTACTCAAAAGAATGAAGTAAATGTCTCTCTAAGATGTGGAGATCCTGCTCGTGC
CTGATGTACTAAAAGAATCTGATATTTATTTATGTCCACAAGGTATGAATGAATTTTGCTTATA
CCATTTCAAAGCTTTTTCTATTTTGGTCTTCCCCTTTGCGTGTTGCATAGTCCATTGAAGAAAT
TGGTCCAACAATTGGCGTAACATAGCATAACTGCAATCAGTTGAGTAATTTGGTCAAGAAACAT
CTAACATAATGACACTTAACAAATATATGATCCCTTGTTTCATCTTCCAGCTGGCAAAACATAC
ATTTAGGGATAGTTTGGTAGAGTTTATAAGAATAATGTAAAATATAGTGTATTAGTAATGCTTG
TATTAGTTATGTTGAGATTTTTTTTATGCAGTGTTTGGTTTGATGTACTAAAAATATCTTGAAT
TGCATAATTTTTAAAAATAATAATATTTGTTTATGAAAATACCCTCCACAAATATAGTGGAAAG
GATGTGGAGAAGTTTTTGAGGGACAATTGTGTCTTTAATCAAATCAATGCATGCATTAGAACCC
ATTGCATTAATAATGTATAGAAATCCATGGTATTACTAATACATTCATCAATACACAATAGGGT
GTATTACTAATACAAGCATTAGTTATACATATGTTGAAAAAGTGTACCAAACAAGGTATTAGTA
ATACCTAAAGCTAATGCATGCATTATTTTTCTCCAATACACTCAATCAAACGACCCCTTTGTCA
TCAATCGATCAACTGTTAGCAGTCTTCCATGGCATTGCAAATTCGCAACCACATTGTGAATTTT
GTGTTGGTTTTTGTATAATTTTGAAACATTAACCCTCTCCAATTCATTCTTGGGTTATCTGGCA
GTAGTTACAAGTAGATCTAGTAGATTAGACTTTTATTGGGCTATGAATTGTGAACTCTTTCTTT
AGGCACATTGAACTATCCCAAGGTCTTCTTGTCCTGTGTGGACCCTTACATACTTTGAGGTGAG
AATACATTGTACTCTTAAGCTCATAATTTTTTCCAAATTAATTATCAAAATGTATGGATCTTTA
CAGGTACACAGAGTCAAAAGTTTGTAGAGGTTGGAACGCTGGATGCTTTGGGGAGGCTGGTTAT
TGCTCCTGCTGGGACTATTGGGTAAACAACAGTACTTCTGTTAGTTTTAGTTATTGAATATATG
TTTTTACATACGTTAAATTTAATGCAGGTTTATTCCCGGCTTCCAATCTGCAAATGCGATTATG
GATTCCATTGTATCATGTTATCGGGACGCTTGGAGTTCCTGGGAAGAGGTACCTGTCTATGACA
GAGAACAAATGTGGAATCACTTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.101511302
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018