Detail information of AT2G04660_circ_g.2


General Information
CircRNA Name AT2G04660_circ_g.2
ID in PlantcircBase ath_circ_012803
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1628182-1628270  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, CIRI-full
Parent gene AT2G04660
Parent gene annotation APC2
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04660.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCACACATGCAGCCATTATTATGCAATTTCAAGAAAAGAAAAGttggagctgcaatttgaaga
cagagcaatgcagttcacagtctca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 89
Transcript exons: 1628182-1628270
TTGGAGCTGCAATTTGAAGACAGAGCAATGCAGTTCACAGTCTCACCCACACATGCAGCCATTA
TTATGCAATTTCAAGAAAAGAAAAG

Genomic sequence TTGGAGCTGCAATTTGAAGACAGAGCAATGCAGTTCACAGTCTCACCCACACATGCAGCCATTA
TTATGCAATTTCAAGAAAAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.237829026
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017