Detail information of BGIOSGA016957_circ_g.1


General Information
CircRNA Name BGIOSGA016957_circ_g.1
ID in PlantcircBase osi_circ_014692
Alias Chr07:29634929_29635431(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27710834-27711336  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016957
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TG-AG
Number of exons covered BGIOSGA016957-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTTTATGATTTCACAGGTGACACATGCTGACTTCAAGAAGGCAAAGGAGAAGGTGATGTTC
AAGAAGAAGGAAGGTGTGCCGGAGGGTCTTTACATGatgatgtgaacctggaagagtttgtcat
gaccaaggatgagttttccggtgctgatatcaaagcaatatgtactgaagctggacttcttgct
ttgagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGATGTGAACCTGGAAGAGTTTGTCATGACCAAGGATGAGTTTTCCGGTGCTGATATCAAAGC
AATATGTACTGAAGCTGGACTTCTTGCTTTGAGAGAACGCCGAATGAAGGTATGAGTGAACCTT
TTTGTCTCTAATTGAAATAATCAAACCTTTTATGAGAGCCCAATTTAGACCGTTTTGTCTACTG
ACCTATATACCAAACAATGTCATTTTTAGTTTTTCTATATGAGTATGTGATACAGTCATACAGA
TAACTAGATTTTTATTTCATTATCAGCTCGACCTTTCAGCGAGATCATTATGTTTTGCTCTGAG
CTTTTATAATGTGCTCGCTCATTGATTATGTCTGGAAGAAACAATTTGCATGGTCCTCACTTCC
ACATTCTTACCGTGGTGTGCTGTTTTATGATTTCACAGGTGACACATGCTGACTTCAAGAAGGC
AAAGGAGAAGGTGATGTTCAAGAAGAAGGAAGGTGTGCCGGAGGGTCTTTACATG
Conservation Information
Conserved circRNAs osa_circ_035440
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021