Plant Circular RNA Database

Detail information of Csa3G840460_circ_g.1

			
						 General Information
					
						CircRNA Name
						Csa3G840460_circ_g.1
					
						ID in PlantcircBase
						csa_circ_002106
					
						Alias
						Chr3:33795839_33799325
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr3: 33795839-33799325  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa3G840460						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa3G840460.1:11

General Information
CircRNA Name	Csa3G840460_circ_g.1
ID in PlantcircBase	csa_circ_002106
Alias	Chr3:33795839_33799325
Organism	Cucumis sativus
Position	chrChr3: 33795839-33799325 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa3G840460
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa3G840460.1:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGGTGGTTATACAACTGCCAATTATATATGGGATCTCTTGCGAGCTCGAGAGATAACTCCTTTA
TTCCCTGCTGTGGATGCATATTACAAGGGATTGAAGgtcaaagccgctcccttgtccgttttct
tggacagcgtcgatcctttgctgtttctacggaagaatacagaaaacggaattacgctgataat
gttgccga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1211
Transcript exons: 33795839-33795977,33796085-33796247,33796354-33796419,33
796527-33796624,33796801-33796918,33797004-33797213,3379
7492-33797568,33798444-33798537,33798861-33798926,337990
07-33799084,33799224-33799325
GTCAAAGCCGCTCCCTTGTCCGTTTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACGGAAGA
ATACAGAAAACGGAATTACGCTGATAATGTTGCCGAGTACAAAACTGTAATTGCCTCCCTCACT
GCCCAGAGAAGGTACTTCTCATTGACGGATGTGTATGACGATATGATGTTGGATGGAGTGCAGC
CTACAATGGACGTTTTCCATTTACTGATATCTGGAACCATGAAAGGCGCTCGTTTCCAGCATGC
TTTTTTCTTCAGGGATGAAATGAAGGCCATGGGTTTGATTCCTGATGTTAGTCTGTATAACATG
CTGATCTCATTATGTGGTAAATGTAACAACTCTGAAGAGGCTGTCCGGATCTTAGATGAGATGA
GGAGATATGAAGTGAAGCCCAATTCACAGACGTACATCTGTCTACTTAATGCTTGTGCAGCTGC
TGGTAGATTAGATCGCGTGTATACGATTGTCAGAGATATGACTTCTGCTGGCCTTGGCTTAAAC
AAGTTCTGCTATGCTGGACTTATAGCTGCACATATGAACAAGAAACCTGTGGCAGATGATTTTG
ATACTAAAGTGGTTGAATTTGTTGAACGGTCAAAGGAATGGTTATCGGTCGACGCATCAAGTGT
AACAGCTGAAAATTTTATGATGGGTGTTTCAGAAGAGGAATTGTACAATATTCCGACTGCTGAA
TATGTTCATAGACGTGGAGGATTTTTGAACAAACAATTGACTATTTATCATGTTGCTTTAAATG
CTTGTGCAAATCTCAAGAATGTGAAGGTTATGGAGACCATAATGGATATGTTAAAGAAGGATGG
AAAAACTCCCGACGTCTACATGATAATGCAAGTTATGAGGTGCTATCTACATTCTGGAGATATT
GATCGTGGTCATAAAGCTTTTGAGGAGCACTTAAATTCTGGGGGTTCTATAGCACCTGAACTCT
ATACAACGCTTGTGGAAGGAGCCATGATTGGTTATACACCAAAGGGAATGCAATTGGCTCAAGA
AACACTGGAAAACATGAATTCCAGGGGCTTTTTCTTGAACCCCAGATCAGGGAGTGAGCTCCTC
CTTGCAGCTGCGGGTGAAAAGACTGGTGGTTATACAACTGCCAATTATATATGGGATCTCTTGC
GAGCTCGAGAGATAACTCCTTTATTCCCTGCTGTGGATGCATATTACAAGGGATTGAAG
						
					

						Genomic sequence
						
							GTCAAAGCCGCTCCCTTGTCCGTTTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACGGAAGA
ATACAGAAAACGGAATTACGCTGATAATGTTGCCGAGTACAAAACTGTAATTGCCTCCCTCACT
GCCCAGAGAAGGTCTTCTTTCTTTCGTTCTTTCTTTCTTTCTTTGATTGATTGATTTGTTGTTC
TTTTTATTCGTGGGTATTTAAAATGGTTTGTTGTTCAATACATTTCTGGTTTAGGTACTTCTCA
TTGACGGATGTGTATGACGATATGATGTTGGATGGAGTGCAGCCTACAATGGACGTTTTCCATT
TACTGATATCTGGAACCATGAAAGGCGCTCGTTTCCAGCATGCTTTTTTCTTCAGGGATGAAAT
GAAGGCCATGGGTTTGATTCCTGATGTAGGTAACTTCTTGAATATCAATTGAGTCTTTTTGGCC
TCTTTCTATGCTTGGCTCTTTCCATTGATCATTACCTTTTTTCTGTACTTGCATATATGTTTTG
CAGGTTAGTCTGTATAACATGCTGATCTCATTATGTGGTAAATGTAACAACTCTGAAGAGGCTG
TCCGGGTAGGTTTCTATGTGTTTTTGAAATGTTCTTTAAGGTTGTTTTGGAAGTTCGAAGGAAA
ATCTGGACCCGTTTTTTAATTGTCAACTATTTTATATTTAAATTGAAGATCTTAGATGAGATGA
GGAGATATGAAGTGAAGCCCAATTCACAGACGTACATCTGTCTACTTAATGCTTGTGCAGCTGC
TGGTAGATTAGATCGCGTGTATGCTTCTTCTTTCACAACCTAACCTCTTATCATTCAGCCTGCA
AGGATTATAGTCATGTTTATTGATCTATGTCATGTATAAATGGATGAGAGTGAAATTATCAGCA
GTAAATTCACTTATTTTCTACTTGGTTGGTTTAATAGTTGTCTGGCATTTTTTATCAATATACT
AGGTATACGATTGTCAGAGATATGACTTCTGCTGGCCTTGGCTTAAACAAGTTCTGCTATGCTG
GACTTATAGCTGCACATATGAACAAGAAACCTGTGGCAGATGATTTTGATACTAAAGTAAAAAT
CATCTCAGCTGTTCTTTATGTCCTTGTTAATATGGGGTTTGTGATATATCAATACAATGCTACT
TTTCTATGATTAGGTGGTTGAATTTGTTGAACGGTCAAAGGAATGGTTATCGGTCGACGCATCA
AGTGTAACAGCTGAAAATTTTATGATGGGTGTTTCAGAAGAGGAATTGTACAATATTCCGACTG
CTGAATATGTTCATAGACGTGGAGGATTTTTGAACAAACAATTGACTATTTATCATGTTGCTTT
AAATGCTTGTGCAAATCTCAAGAATGTGAAGGTATCTGACTCATAATTTCACAATATTATTGGA
TAAACTTAATCGGATTAGGGTTTCTTTATTTCAGTTATGTTCTACATATATGATAGTCGAGCCA
TTCTGCTATTGTTAGGTCTCCTGCTATTATTTCTTACGTAGTAGATACCCTCTATTCTCCTTTA
TAACTTAATTTTTATCAAATGTTTTCATATATTACATGTTAACTTCCTCGTCATGTATTTTCAT
ATAAAATACTTTTTTGTTTCTTATCAGTTTTTTGTTTCTTATAATCTAAGTAGGTTATGGAGAC
CATAATGGATATGTTAAAGAAGGATGGAAAAACTCCCGACGTCTACATGATAATGCAAGTTATG
AGGTAAAGAGCTCAGTCCAAAAATTAAATTCTGTTGTCTATGGCTCCATGCAGTTTCTAATTAA
ATGTCACTGGATAGATCAATTTGATTGGACTATTGCATTGATTGCATGGGAATCACTCACAATT
ACCCCAGTAATTGAAAGCCAACAATTTTGTTTGATTGAGCTGGTTTTCTTTAGCTGTTCATTAG
TTCGCTTCTTGTTTTGATGAGAATGACCAGGGTGATAAATTTTAAAGATCAGATTGTTATAAGA
TAATAACTATAAAGTTTGCGTAGATCTAATGGAACTACTGATTTGGCCTTGTTTGTGCATTTGC
CTGCCATTGATCAAGCTTAATGTAATATGGTTGCAAGTTGAGTGTTTTTTTTGTATGGCTCTCG
ATTACACCAGTGATGGAGGCTTGTGTTGGATTGATTATATTATTGTAGAGGTTCGTGTGATCAT
TCAGTTTTTGTCTCTAACATGCGCTGTTTAGTAGCTTTTGTATGGGTGCTTTCTTGTATTTTCA
TATCCTTGTCATGTAGCTTGAATGAAAGTTGCGAGGATTGTACATCAGCACTATGTATAGGTTG
CAGTCGTGTTGTTTCATTATTTTTGACATCTCATTTATAGGATTCTTGGTTATTAGAATTCCTA
ACCACTCAGTGATTTTTTTTTGTTCTATTGAAATTACAATGTAACCCACTCCATGTTTATTGGA
AGAACTGCTAATAGTCTAATACAGATTTTCATCTAAATAGATGTGTGGAGTTTGAGGCTTAATC
ATAAAATTGATTATTTTGGACATAGGATGGATGAGTCAAGTCATCAATACTATTCTAGGATCTT
CAATTTTATTAGTTGTTCTGTGATTTGACAGTTAACTTCTCACAGGTGCTATCTACATTCTGGA
GATATTGATCGTGGTCATAAAGCTTTTGAGGAGCACTTAAATTCTGGGGGTTCTATAGCACCTG
AACTCTATACAGTGAGTTTGGCCCAACTATGTTTCTGGCTTCTGCTTTTACAGCACTAAAATAT
TACTCCATATTAACTGTTCTTAACCAAAAAGGAGATATCTTTATATATATATATATATATGTTC
TACTGTCCATCTACACGTTTTCTATTTTCTTTGGAAATTCCTGAAAATCTAGAGTGAGAGTTAA
CTTTTTCCAATATATTTTATCTCACTTGCAAATGAGATTGCTGTAGTATAGACACTTCAAATGA
ACAATACGAGAGTTTTTATTAGTAAGCATTCAAGGTAACTACTGCGGATATTTAGCAACGGTTT
TTATTTGGCTGTAGACGCTTGTGGAAGGAGCCATGATTGGTTATACACCAAAGGGAATGCAATT
GGCTCAAGAAACACTGGTAACTTCCAATTTCTACTGAAGTTACAATTGAAATTGAGTTAATCTT
AGTAATGCGATGTTGATTATTGCTTATTGCAGGAAAACATGAATTCCAGGGGCTTTTTCTTGAA
CCCCAGATCAGGGAGTGAGCTCCTCCTTGCAGCTGCGGGTGAAAAGGTAGGCCGACGGTTTATT
ACATTTTAGTTCACAAGAGACCCTTGTGGTTAGCAATTGGCTACTCAAAATTCTTACACTTGTT
ACTTCGAGGTCCATATGATTCAAAAAATGTGTTTAATTTTTTCATATTACGATGCAGACTGGTG
GTTATACAACTGCCAATTATATATGGGATCTCTTGCGAGCTCGAGAGATAACTCCTTTATTCCC
TGCTGTGGATGCATATTACAAGGGATTGAAG
						
					

			
		

Sequences
Splice junction sequence	TGGTGGTTATACAACTGCCAATTATATATGGGATCTCTTGCGAGCTCGAGAGATAACTCCTTTA TTCCCTGCTGTGGATGCATATTACAAGGGATTGAAGgtcaaagccgctcccttgtccgttttct tggacagcgtcgatcctttgctgtttctacggaagaatacagaaaacggaattacgctgataat gttgccga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1211 Transcript exons: 33795839-33795977,33796085-33796247,33796354-33796419,33 796527-33796624,33796801-33796918,33797004-33797213,3379 7492-33797568,33798444-33798537,33798861-33798926,337990 07-33799084,33799224-33799325 GTCAAAGCCGCTCCCTTGTCCGTTTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACGGAAGA ATACAGAAAACGGAATTACGCTGATAATGTTGCCGAGTACAAAACTGTAATTGCCTCCCTCACT GCCCAGAGAAGGTACTTCTCATTGACGGATGTGTATGACGATATGATGTTGGATGGAGTGCAGC CTACAATGGACGTTTTCCATTTACTGATATCTGGAACCATGAAAGGCGCTCGTTTCCAGCATGC TTTTTTCTTCAGGGATGAAATGAAGGCCATGGGTTTGATTCCTGATGTTAGTCTGTATAACATG CTGATCTCATTATGTGGTAAATGTAACAACTCTGAAGAGGCTGTCCGGATCTTAGATGAGATGA GGAGATATGAAGTGAAGCCCAATTCACAGACGTACATCTGTCTACTTAATGCTTGTGCAGCTGC TGGTAGATTAGATCGCGTGTATACGATTGTCAGAGATATGACTTCTGCTGGCCTTGGCTTAAAC AAGTTCTGCTATGCTGGACTTATAGCTGCACATATGAACAAGAAACCTGTGGCAGATGATTTTG ATACTAAAGTGGTTGAATTTGTTGAACGGTCAAAGGAATGGTTATCGGTCGACGCATCAAGTGT AACAGCTGAAAATTTTATGATGGGTGTTTCAGAAGAGGAATTGTACAATATTCCGACTGCTGAA TATGTTCATAGACGTGGAGGATTTTTGAACAAACAATTGACTATTTATCATGTTGCTTTAAATG CTTGTGCAAATCTCAAGAATGTGAAGGTTATGGAGACCATAATGGATATGTTAAAGAAGGATGG AAAAACTCCCGACGTCTACATGATAATGCAAGTTATGAGGTGCTATCTACATTCTGGAGATATT GATCGTGGTCATAAAGCTTTTGAGGAGCACTTAAATTCTGGGGGTTCTATAGCACCTGAACTCT ATACAACGCTTGTGGAAGGAGCCATGATTGGTTATACACCAAAGGGAATGCAATTGGCTCAAGA AACACTGGAAAACATGAATTCCAGGGGCTTTTTCTTGAACCCCAGATCAGGGAGTGAGCTCCTC CTTGCAGCTGCGGGTGAAAAGACTGGTGGTTATACAACTGCCAATTATATATGGGATCTCTTGC GAGCTCGAGAGATAACTCCTTTATTCCCTGCTGTGGATGCATATTACAAGGGATTGAAG
Genomic sequence	GTCAAAGCCGCTCCCTTGTCCGTTTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACGGAAGA ATACAGAAAACGGAATTACGCTGATAATGTTGCCGAGTACAAAACTGTAATTGCCTCCCTCACT GCCCAGAGAAGGTCTTCTTTCTTTCGTTCTTTCTTTCTTTCTTTGATTGATTGATTTGTTGTTC TTTTTATTCGTGGGTATTTAAAATGGTTTGTTGTTCAATACATTTCTGGTTTAGGTACTTCTCA TTGACGGATGTGTATGACGATATGATGTTGGATGGAGTGCAGCCTACAATGGACGTTTTCCATT TACTGATATCTGGAACCATGAAAGGCGCTCGTTTCCAGCATGCTTTTTTCTTCAGGGATGAAAT GAAGGCCATGGGTTTGATTCCTGATGTAGGTAACTTCTTGAATATCAATTGAGTCTTTTTGGCC TCTTTCTATGCTTGGCTCTTTCCATTGATCATTACCTTTTTTCTGTACTTGCATATATGTTTTG CAGGTTAGTCTGTATAACATGCTGATCTCATTATGTGGTAAATGTAACAACTCTGAAGAGGCTG TCCGGGTAGGTTTCTATGTGTTTTTGAAATGTTCTTTAAGGTTGTTTTGGAAGTTCGAAGGAAA ATCTGGACCCGTTTTTTAATTGTCAACTATTTTATATTTAAATTGAAGATCTTAGATGAGATGA GGAGATATGAAGTGAAGCCCAATTCACAGACGTACATCTGTCTACTTAATGCTTGTGCAGCTGC TGGTAGATTAGATCGCGTGTATGCTTCTTCTTTCACAACCTAACCTCTTATCATTCAGCCTGCA AGGATTATAGTCATGTTTATTGATCTATGTCATGTATAAATGGATGAGAGTGAAATTATCAGCA GTAAATTCACTTATTTTCTACTTGGTTGGTTTAATAGTTGTCTGGCATTTTTTATCAATATACT AGGTATACGATTGTCAGAGATATGACTTCTGCTGGCCTTGGCTTAAACAAGTTCTGCTATGCTG GACTTATAGCTGCACATATGAACAAGAAACCTGTGGCAGATGATTTTGATACTAAAGTAAAAAT CATCTCAGCTGTTCTTTATGTCCTTGTTAATATGGGGTTTGTGATATATCAATACAATGCTACT TTTCTATGATTAGGTGGTTGAATTTGTTGAACGGTCAAAGGAATGGTTATCGGTCGACGCATCA AGTGTAACAGCTGAAAATTTTATGATGGGTGTTTCAGAAGAGGAATTGTACAATATTCCGACTG CTGAATATGTTCATAGACGTGGAGGATTTTTGAACAAACAATTGACTATTTATCATGTTGCTTT AAATGCTTGTGCAAATCTCAAGAATGTGAAGGTATCTGACTCATAATTTCACAATATTATTGGA TAAACTTAATCGGATTAGGGTTTCTTTATTTCAGTTATGTTCTACATATATGATAGTCGAGCCA TTCTGCTATTGTTAGGTCTCCTGCTATTATTTCTTACGTAGTAGATACCCTCTATTCTCCTTTA TAACTTAATTTTTATCAAATGTTTTCATATATTACATGTTAACTTCCTCGTCATGTATTTTCAT ATAAAATACTTTTTTGTTTCTTATCAGTTTTTTGTTTCTTATAATCTAAGTAGGTTATGGAGAC CATAATGGATATGTTAAAGAAGGATGGAAAAACTCCCGACGTCTACATGATAATGCAAGTTATG AGGTAAAGAGCTCAGTCCAAAAATTAAATTCTGTTGTCTATGGCTCCATGCAGTTTCTAATTAA ATGTCACTGGATAGATCAATTTGATTGGACTATTGCATTGATTGCATGGGAATCACTCACAATT ACCCCAGTAATTGAAAGCCAACAATTTTGTTTGATTGAGCTGGTTTTCTTTAGCTGTTCATTAG TTCGCTTCTTGTTTTGATGAGAATGACCAGGGTGATAAATTTTAAAGATCAGATTGTTATAAGA TAATAACTATAAAGTTTGCGTAGATCTAATGGAACTACTGATTTGGCCTTGTTTGTGCATTTGC CTGCCATTGATCAAGCTTAATGTAATATGGTTGCAAGTTGAGTGTTTTTTTTGTATGGCTCTCG ATTACACCAGTGATGGAGGCTTGTGTTGGATTGATTATATTATTGTAGAGGTTCGTGTGATCAT TCAGTTTTTGTCTCTAACATGCGCTGTTTAGTAGCTTTTGTATGGGTGCTTTCTTGTATTTTCA TATCCTTGTCATGTAGCTTGAATGAAAGTTGCGAGGATTGTACATCAGCACTATGTATAGGTTG CAGTCGTGTTGTTTCATTATTTTTGACATCTCATTTATAGGATTCTTGGTTATTAGAATTCCTA ACCACTCAGTGATTTTTTTTTGTTCTATTGAAATTACAATGTAACCCACTCCATGTTTATTGGA AGAACTGCTAATAGTCTAATACAGATTTTCATCTAAATAGATGTGTGGAGTTTGAGGCTTAATC ATAAAATTGATTATTTTGGACATAGGATGGATGAGTCAAGTCATCAATACTATTCTAGGATCTT CAATTTTATTAGTTGTTCTGTGATTTGACAGTTAACTTCTCACAGGTGCTATCTACATTCTGGA GATATTGATCGTGGTCATAAAGCTTTTGAGGAGCACTTAAATTCTGGGGGTTCTATAGCACCTG AACTCTATACAGTGAGTTTGGCCCAACTATGTTTCTGGCTTCTGCTTTTACAGCACTAAAATAT TACTCCATATTAACTGTTCTTAACCAAAAAGGAGATATCTTTATATATATATATATATATGTTC TACTGTCCATCTACACGTTTTCTATTTTCTTTGGAAATTCCTGAAAATCTAGAGTGAGAGTTAA CTTTTTCCAATATATTTTATCTCACTTGCAAATGAGATTGCTGTAGTATAGACACTTCAAATGA ACAATACGAGAGTTTTTATTAGTAAGCATTCAAGGTAACTACTGCGGATATTTAGCAACGGTTT TTATTTGGCTGTAGACGCTTGTGGAAGGAGCCATGATTGGTTATACACCAAAGGGAATGCAATT GGCTCAAGAAACACTGGTAACTTCCAATTTCTACTGAAGTTACAATTGAAATTGAGTTAATCTT AGTAATGCGATGTTGATTATTGCTTATTGCAGGAAAACATGAATTCCAGGGGCTTTTTCTTGAA CCCCAGATCAGGGAGTGAGCTCCTCCTTGCAGCTGCGGGTGAAAAGGTAGGCCGACGGTTTATT ACATTTTAGTTCACAAGAGACCCTTGTGGTTAGCAATTGGCTACTCAAAATTCTTACACTTGTT ACTTCGAGGTCCATATGATTCAAAAAATGTGTTTAATTTTTTCATATTACGATGCAGACTGGTG GTTATACAACTGCCAATTATATATGGGATCTCTTGCGAGCTCGAGAGATAACTCCTTTATTCCC TGCTGTGGATGCATATTACAAGGGATTGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.471025466

Conservation Information
Conserved circRNAs	NA
PMCS	0.471025466

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33799254-33795949(+)
33796117-33795949(+)
						
						Potential amino acid sequence
						
							MGSLASSRDNSFIPCCGCILQGIEGQSRSLVRFLGQRRSFAVSTEEYRKRNYADNVAEYKTVIA
SLTAQRRYFSLTDVYDDMMLDGVQPTMDVFHLLISGTMKGARFQHAFFFRDEMKAMGLIPDVSL
YNMLISLCGKCNNSEEAVRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGL
GLNKFCYAGLIAAHMNKKPVADDFDTKVVEFVERSKEWLSVDASSVTAENFMMGVSEEELYNIP
TAEYVHRRGGFLNKQLTIYHVALNACANLKNVKVMETIMDMLKKDGKTPDVYMIMQVMRCYLHS
GDIDRGHKAFEEHLNSGGSIAPELYTTLVEGAMIGYTPKGMQLAQETLENMNSRGFFLNPRSGS
ELLLAAAGEKTGGYTTANYIWDLLRAREITPLFPAVDAYYKGLKVKAAPLSVFLDSVDPLLFLR
KNTENGITLIMLPSTKL*
MMLDGVQPTMDVFHLLISGTMKGARFQHAFFFRDEMKAMGLIPDVSLYNMLISLCGKCNNSEEA
VRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGLGLNKFCYAGLIAAHMNK
KPVADDFDTKVVEFVERSKEWLSVDASSVTAENFMMGVSEEELYNIPTAEYVHRRGGFLNKQLT
IYHVALNACANLKNVKVMETIMDMLKKDGKTPDVYMIMQVMRCYLHSGDIDRGHKAFEEHLNSG
GSIAPELYTTLVEGAMIGYTPKGMQLAQETLENMNSRGFFLNPRSGSELLLAAAGEKTGGYTTA
NYIWDLLRAREITPLFPAVDAYYKGLKVKAAPLSVFLDSVDPLLFLRKNTENGITLIMLPSTKL
*
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	Y
Potential coding position	33799254-33795949(+) 33796117-33795949(+)
Potential amino acid sequence	MGSLASSRDNSFIPCCGCILQGIEGQSRSLVRFLGQRRSFAVSTEEYRKRNYADNVAEYKTVIA SLTAQRRYFSLTDVYDDMMLDGVQPTMDVFHLLISGTMKGARFQHAFFFRDEMKAMGLIPDVSL YNMLISLCGKCNNSEEAVRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGL GLNKFCYAGLIAAHMNKKPVADDFDTKVVEFVERSKEWLSVDASSVTAENFMMGVSEEELYNIP TAEYVHRRGGFLNKQLTIYHVALNACANLKNVKVMETIMDMLKKDGKTPDVYMIMQVMRCYLHS GDIDRGHKAFEEHLNSGGSIAPELYTTLVEGAMIGYTPKGMQLAQETLENMNSRGFFLNPRSGS ELLLAAAGEKTGGYTTANYIWDLLRAREITPLFPAVDAYYKGLKVKAAPLSVFLDSVDPLLFLR KNTENGITLIMLPSTKL* MMLDGVQPTMDVFHLLISGTMKGARFQHAFFFRDEMKAMGLIPDVSLYNMLISLCGKCNNSEEA VRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGLGLNKFCYAGLIAAHMNK KPVADDFDTKVVEFVERSKEWLSVDASSVTAENFMMGVSEEELYNIPTAEYVHRRGGFLNKQLT IYHVALNACANLKNVKVMETIMDMLKKDGKTPDVYMIMQVMRCYLHSGDIDRGHKAFEEHLNSG GSIAPELYTTLVEGAMIGYTPKGMQLAQETLENMNSRGFFLNPRSGSELLLAAAGEKTGGYTTA NYIWDLLRAREITPLFPAVDAYYKGLKVKAAPLSVFLDSVDPLLFLRKNTENGITLIMLPSTKL *
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa3G840460_circ_g.1

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