Detail information of BGIOSGA010991_circ_g.6


General Information
CircRNA Name BGIOSGA010991_circ_g.6
ID in PlantcircBase osi_circ_004725
Alias 3:10232432|10232609
Organism Oryza sativa ssp. indica
Position chr3: 10232432-10232609  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA010991
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA010991_circ_igg.1 BGIOSGA010991_circ_g.1 BGIOSGA010991_circ_g.2 BGIOSGA010991_circ_g.3 BGIOSGA010991_circ_g.4 BGIOSGA010991_circ_igg.5 BGIOSGA010991_circ_igg.7
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA010991-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGCCGCCTGGGCGGCTGCGCGGACGACGACGCGACGACCGGCGCGCGGCGAGGGGAGCACGA
GGTGGCGGTCGCAGCCATCATAGCCcgccggtagcggcgccgcggccacggccacggccgccgt
cgccacgagccccggcagctgcttcaatcccctccgcggttgctgctgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCGGTAGCGGCGCCGCGGCCACGGCCACGGCCGCCGTCGCCACGAGCCCCGGCAGCTGCTTC
AATCCCCTCCGCGGTTGCTGCTGCTGCTGCCGCCTGGGCGGCTGCGCGGACGACGACGCGACGA
CCGGCGCGCGGCGAGGGGAGCACGAGGTGGCGGTCGCAGCCATCATAGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021