Plant Circular RNA Database

Detail information of Os05g0144400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0144400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026545
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2564713-2571995  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0144400						
					
						Parent gene annotation
						
							Serine/threonine-specific protein phosphatase and bis(5-nucleosy
l)-tetraphosphatase domain containing protein. (Os05t0144400-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0144400_circ_g.2 Os05g0144400_circ_g.3 Os05g0144400_circ_g.4 Os05g0144400_circ_g.5 Os05g0144400_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0144400-01:18

General Information
CircRNA Name	Os05g0144400_circ_g.1
ID in PlantcircBase	osa_circ_026545
Alias	NA
Organism	Oryza sativa
Position	chr5: 2564713-2571995 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0144400
Parent gene annotation	Serine/threonine-specific protein phosphatase and bis(5-nucleosy l)-tetraphosphatase domain containing protein. (Os05t0144400-01)
Parent gene strand	+
Alternative splicing	Os05g0144400_circ_g.2 Os05g0144400_circ_g.3 Os05g0144400_circ_g.4 Os05g0144400_circ_g.5 Os05g0144400_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0144400-01:18

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTGCAACTAATCATAAGAGCTCATGAGTGTGTTATGGATGGGTTTGAGCGTTTTGCTCATGGGC
AATTGATAACTTTATTTTCAGCCACTAACTATTGTGggctcgcgggggtgacgaactcggtgca
ctcgtatgatgtggacacgcgcaggtggacgaggtacgggcgctgctcgcgtttagattttgtt
tcatatgg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TTGCAACTAATCATAAGAGCTCATGAGTGTGTTATGGATGGGTTTGAGCGTTTTGCTCATGGGC AATTGATAACTTTATTTTCAGCCACTAACTATTGTGggctcgcgggggtgacgaactcggtgca ctcgtatgatgtggacacgcgcaggtggacgaggtacgggcgctgctcgcgtttagattttgtt tcatatgg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.112751495

Conservation Information
Conserved circRNAs	NA
PMCS	0.112751495

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2565153-2571992(+)
2565115-2571986(-)
2565132-2571979(-)
						
					

						Potential amino acid sequence
						
							MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDG
KRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASARTDGMLLLCGGRDASGMPLSDAYGL
LMHTSGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLD
RNGIVTSRTLKSSHDHDASSDLLRRCRHAAASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEF
TSSMYDRVPRAENQNRNHNFNSDSPTTNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEASHAS
SEDSLSEGIGSESPLSETSPMPEDLDDGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQF
ENESRRMHPSSNDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEVGELC
YAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRG
QHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFN
YLPLAAMIEKKIICMHGGIGRSINTIEQIEKLERPITMDVGSIILMDLLWSDPTENDSVEGLRP
NARGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYCGLAGVTNS
VHSYDVDTRRWTRLHPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKW
HRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPS
ARMYATASARTDGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFVG
ARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLDRNGIVTSRTLKSSHDHDASSDLLRRCRHAA
ASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEFTSSMYDRVPRAENQNRNHNFNSDSPTTNNS
TDKKSIDMLTQASAAEAEAVSAVWRAAQEASHASSEDSLSEGIGSESPLSETSPMPEDLDDGGS
LEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQFENESRRMHPSSNDQSYPAKKALNRQRSPQG
LHKKVISFLLKPRNWRAPAERAFFLDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQF
GDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA
ADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKKIICMHGGIGRSINTIEQIE
KLERPITMDVGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKRNRLQLIIRA
HECVMDGFERFAHGQLITLFSATNYCGLAGVTNSVHSYDVDTRRWTRLHPAGEPPSPRAAHAAA
AVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVS
GNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASARTDGMLLLCGGRDASGMPLSD
AYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAG
VWLDRNGIVTSRTLKSSHDHDASSDLLRRCRHAAASVGTQIYIYGGLRGDILLDDFLVADNAPI
QSEFTSSMYDRVPRAENQNRNHNFNSDSPTTNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEA
SHASSEDSLSEGIGSESPLSETSPMPEDLDDGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLS
LDQFENESRRMHPSSNDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEV
GELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDY
VDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFN
QLFNYLPLAAMIEKKIICMHGGIGRSINTIEQIEKLERPITMDVGSIILMDLLWSDPTENDSVE
GLRPNARGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYCGLAG
VTNSVHSYDVDTRRWTRLHPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTND
KFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDG
DRPSARMYATASARTDGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAA
VFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLDRNGIVTSRTLKSSHDHDASSDLLRRC
RHAAASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEFTSSMYDRVPRAENQNRNHNFNSDSPT
TNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEASHASSEDSLSEGIGSESPLSETSPMPEDLD
DGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQFENESRRMHPSSNDQSYPAKKALNRQR
SPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDL
HGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRG
NHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKKIICMHGGIGRSINTI
EQIEKLERPITMDVGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKRNRLQL
IIRAHECVMDGFERFAHGQLITLFSATNYC(+)
MEALQLDAISSTCACPHHTSAPSSSPPRAHNS*(-)
MCSPRRWRLSSWMQSRPPARVHIIRVHRVRHPREPTIVSG*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2565153-2571992(+) 2565115-2571986(-) 2565132-2571979(-)
Potential amino acid sequence	MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDG KRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASARTDGMLLLCGGRDASGMPLSDAYGL LMHTSGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLD RNGIVTSRTLKSSHDHDASSDLLRRCRHAAASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEF TSSMYDRVPRAENQNRNHNFNSDSPTTNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEASHAS SEDSLSEGIGSESPLSETSPMPEDLDDGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQF ENESRRMHPSSNDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEVGELC YAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRG QHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFN YLPLAAMIEKKIICMHGGIGRSINTIEQIEKLERPITMDVGSIILMDLLWSDPTENDSVEGLRP NARGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYCGLAGVTNS VHSYDVDTRRWTRLHPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKW HRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPS ARMYATASARTDGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFVG ARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLDRNGIVTSRTLKSSHDHDASSDLLRRCRHAA ASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEFTSSMYDRVPRAENQNRNHNFNSDSPTTNNS TDKKSIDMLTQASAAEAEAVSAVWRAAQEASHASSEDSLSEGIGSESPLSETSPMPEDLDDGGS LEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQFENESRRMHPSSNDQSYPAKKALNRQRSPQG LHKKVISFLLKPRNWRAPAERAFFLDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQF GDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA ADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKKIICMHGGIGRSINTIEQIE KLERPITMDVGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKRNRLQLIIRA HECVMDGFERFAHGQLITLFSATNYCGLAGVTNSVHSYDVDTRRWTRLHPAGEPPSPRAAHAAA AVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVS GNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASARTDGMLLLCGGRDASGMPLSD AYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAG VWLDRNGIVTSRTLKSSHDHDASSDLLRRCRHAAASVGTQIYIYGGLRGDILLDDFLVADNAPI QSEFTSSMYDRVPRAENQNRNHNFNSDSPTTNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEA SHASSEDSLSEGIGSESPLSETSPMPEDLDDGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLS LDQFENESRRMHPSSNDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEV GELCYAAEQIFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDY VDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWTRFN QLFNYLPLAAMIEKKIICMHGGIGRSINTIEQIEKLERPITMDVGSIILMDLLWSDPTENDSVE GLRPNARGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQLITLFSATNYCGLAG VTNSVHSYDVDTRRWTRLHPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTND KFKWHRVVVQGAGPGPRYGHCMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDG DRPSARMYATASARTDGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAA VFVGARLHVTGGVLRGGRAIEGEGAIAVLDTAAGVWLDRNGIVTSRTLKSSHDHDASSDLLRRC RHAAASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEFTSSMYDRVPRAENQNRNHNFNSDSPT TNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEASHASSEDSLSEGIGSESPLSETSPMPEDLD DGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQFENESRRMHPSSNDQSYPAKKALNRQR SPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEVGELCYAAEQIFMQEPTVLQLKAPIKVFGDL HGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRG NHEAADINALFGFRLECIERMGESDGIWAWTRFNQLFNYLPLAAMIEKKIICMHGGIGRSINTI EQIEKLERPITMDVGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKRNRLQL IIRAHECVMDGFERFAHGQLITLFSATNYC(+) MEALQLDAISSTCACPHHTSAPSSSPPRAHNS(-) MCSPRRWRLSSWMQSRPPARVHIIRVHRVRHPREPTIVSG(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0144400_circ_g.1

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