Plant Circular RNA Database

Detail information of Os01g0764000_circ_g.20

			
						 General Information
					
						CircRNA Name
						Os01g0764000_circ_g.20
					
						ID in PlantcircBase
						osa_circ_040642
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 32148825-32151802  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							Os01g0764000						
					
						Parent gene annotation
						
							Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GS
T-29) (GST class- phi). (Os01t0764000-01);Similar to Glutathione
 s-transferase ii (Fragment). (Os01t0764000-02);Similar to Gluta
thione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class
- phi). (Os01t0764000-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0764050-00:2
Os01t0764050-00:2
Os01t0764000-03:3
Os01t0764000-02:1
Os01t0764000-01:3

General Information
CircRNA Name	Os01g0764000_circ_g.20
ID in PlantcircBase	osa_circ_040642
Alias	NA
Organism	Oryza sativa
Position	chr1: 32148825-32151802 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRI-long
Parent gene	Os01g0764000
Parent gene annotation	Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GS T-29) (GST class- phi). (Os01t0764000-01);Similar to Glutathione s-transferase ii (Fragment). (Os01t0764000-02);Similar to Gluta thione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class - phi). (Os01t0764000-03)
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0764050-00:2 Os01t0764050-00:2 Os01t0764000-03:3 Os01t0764000-02:1 Os01t0764000-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCACGATCTCG
TACTCGGCGCCGGCCTCCTCCAGCACCGCCACGCACatacttgcaaattgcacgtgattctaac
aagaagaaattagacagagctatcagttatggttaaaaaaacaacatttgtaaatgaccaagat
tctacagg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 172
Transcript exons: 32148825-32148847,32149728-32149776,32151703-32151802
ATACTTGCAAATTGCACGTGATTCCCAGAGGAACAAGTCACCATCTTGCAAAGCCGGCACCTGA
CCAAAGGGGTTCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCA
CGATCTCGTACTCGGCGCCGGCCTCCTCCAGCACCGCCACGCAC
						
					

						Genomic sequence
						
							ATACTTGCAAATTGCACGTGATTCTAACAAGAAGAAATTAGACAGAGCTATCAGTTATGGTTAA
AAAAACAACATTTGTAAATGACCAAGATTCTACAGGCATATGCTCAACAGTGGTCTCTTACTCT
AAGAGACTGGCCCAAAACTGCAATACTATGCCTGTCGTAGGAATTAAAATTATAAACATGATTT
ATAGGCATTGGCTTGAACTCGTAATTGGCAGTAATAGTATGTATTGTTTCATCATATTCTTCAA
AAGAAATTTATTGCTTCATCAGTTTGAGACCATCCCGACCATGAGACTATGGTGCATGACTAAA
AGGCTCAGTTTGGTTACTCTTAATACTTTACCAATAAAAACCTTAACCCTGACAACACAATGAC
AGTTCGCGATGGCAATGAATTGTACTTTTCATTGGGTGAGGTGGTTTGTTGCAGGGTTGTTCCC
ACAGCCCACCTGGGTTTGAATCTTGAATCTGGCAAATTTTCTCCTCGGGGATTTCTTGAACCTT
TTCTTCTTAATTCCAAGATACCTAGCCTCCTCCTGGCTATTCCTTTTTTTTATTAATTGTATTT
TTCACCATAATGTATTAATGAATTTCGCAGACTCCTTTTATCTTTGTAGACACCTCCTTTTAAT
CTTAATGCAATTGGTTGGTCGCTTCTTTTGGCCAACCCGGCAAAAAAAAGGACTCATTTATCCT
TTAATAAAGAATATCCATAACACTGAATCAGGTGCTTCCAGAAAAAAGGTCATGTGAGGATGTG
CTAGCGTTGTTAGTATATGTTAGGAAAAGAGGCATGATAGTTTCCACGGTGAAAGAAAAATCAG
CTAAAGCATCAGTTCCCTTTATTTACGAGGGGGAAAAAAGGATAAAACAACACCAAGAGATAGC
ATCATACCCCAGAGGAACAAGTCACCATCTTGCAAAGCCGGCACCTGACCAAAGGGCTGCAGAG
GATATCACAAGAAACAATGAGTTTAGCAAACAAATGTCATAGTTATCCCCCAAGTGCGACAAAT
GTATTTATTGTCAAAGTTATGCTGGTGAGATAATCCTATGGATAGGGACCTTCACTCACGACAT
AACAGATTCCAGAAAGGTGACATATGGTAACAAGTGTAAAAAATTAAATTGCTACATCACAAAC
CAACTAAAAGCATACACATATAAATATATCACCATCAAACATGAGTAATATAAAGGAAGCTAAT
GGTGGTGCCGGTGGTGAAATGTGCCAGCCCCTACCACCTCTTTGAGTTGCCAGGATTATCTAAG
AAGTTGATATTTGTGCATGTGACTTTTAATAATGTCCTTTATGGATTGATGTTTGGTTGAAAAC
TATATTTATTTTAGGAGTTCTCAAATTAAAAAATACGACATATTTATTAGAAAAATAGAAACCA
TTACAATGCATGGGCATCTGGTTAGTTGTATAACAAACGTGTAAAAGATGGCATTCCCATCTAT
TCCTCTGTTCAATGGTTGGAAGAGGCAAAAAGTCCATAAGTTGGACACTGAAAATGTTAGAAGT
AATAGAGCACAGCCAGCAAATTTATATTGGTCAGGATAAGGCTGATGAAGCATGCAGAGTTGAT
TAAAAAAATTTCTCCTCAAACAATACTGTACGGTCTACCAGACAATATTTACTATAGGAAACAC
CTGGCAGCGACAAGTGGTCATCTACTACCTCCTTTTAAATTCTAAACCTCATCACCTAATTATC
ACGCCTCCTTTGTTCCCCAGAAAATTAAATGGAGGCATTTGTTTGTTCTTTGCCTACCTATAGC
TTCCTTCACTCCAGTCACTTTTCCCTTTCCCTTTCTCTCAAATGGATTTGGAGATCAGGAGTAA
CTAGTTCACAAATTAACATGGCAGGAAATCGATTCTTATTAGCAATTCTCTTGAACAGTTTATT
AGAAGAACTACAAATTTCTGTTCTTCGAACGGATATAAACAATAAACTTTTCCACATTTGATCC
AGTTCACCTTCTCTCGAACAGTTTATTAGAAGAACTACAAATTTCTGTTCTTTGAACGGATATA
AACAATAAACTTTTCCACATTTGATCCAGTTCACCCACCCAAATCTTGCTACATACTCTTGAAC
TTAAAGCTGCGCACATTTATCATCAAGGCCTGTTTGGTTCACACCCTGAGAACAGGCGTCCGAT
TTTGGTGGCCTGTGGTTGGATGCCAGTGAGAGCGCTCAGGTCAGGGCACCATCCAAACAAACCT
CTCAAATAGAAAACTGGAGATCGTCTAAATCCCAGGAGCAAGTCAGAGAAGCACACCATAATTT
CTTTGGGTCAACATCAGCCATTCGATCTAAGATGGACAGATCAGATCTTCCACTTGAGGGCTAT
ACGAATACGACATCATCAAAATGGTAGCCTAATATAGCATGATCATGACATACCATAGTGCTGT
GTGTACGTGGCAGCGTCGGTGGTGGTTGCAGGAAGTGAGGATGTTAGCCTTGTGGGGGGGGGGG
GGGGGGGCGGAGAAAGGGTGGTTTGATGCTGAAGCAAGGATTACTACCGTCTACGCTGTGGATG
ACAGAACCCAAAATTCGTGGTATTGAAGGATTACCGGAAGAAACTATATATACCTCTTTCATAT
GTCTACTTGGAACACAGTACTTCTTAAACATATTTTATTTTCGTCTTAAACCTAAACGCCTCAT
CGTAGAACTCCTAGACTTCTTATTGGGTGATAACTCCCAAGTCCCAAGATATTAGCGGCCGCAG
CAAAATCGCTCCCGTTGACTGAAAGTGAGGGCATGGAAACAACATATCTCGTCGTCGACTGAGG
GAAATCGTAACAAAAAGAAAGGAAACAACTAGCGAGCGAGGGGAGGGGCGGTGGGCACGTACGT
TCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCACGATCTCGTA
CTCGGCGCCGGCCTCCTCCAGCACCGCCACGCAC
						
					

			
		

Sequences
Splice junction sequence	GTTCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCACGATCTCG TACTCGGCGCCGGCCTCCTCCAGCACCGCCACGCACatacttgcaaattgcacgtgattctaac aagaagaaattagacagagctatcagttatggttaaaaaaacaacatttgtaaatgaccaagat tctacagg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 172 Transcript exons: 32148825-32148847,32149728-32149776,32151703-32151802 ATACTTGCAAATTGCACGTGATTCCCAGAGGAACAAGTCACCATCTTGCAAAGCCGGCACCTGA CCAAAGGGGTTCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCA CGATCTCGTACTCGGCGCCGGCCTCCTCCAGCACCGCCACGCAC
Genomic sequence	ATACTTGCAAATTGCACGTGATTCTAACAAGAAGAAATTAGACAGAGCTATCAGTTATGGTTAA AAAAACAACATTTGTAAATGACCAAGATTCTACAGGCATATGCTCAACAGTGGTCTCTTACTCT AAGAGACTGGCCCAAAACTGCAATACTATGCCTGTCGTAGGAATTAAAATTATAAACATGATTT ATAGGCATTGGCTTGAACTCGTAATTGGCAGTAATAGTATGTATTGTTTCATCATATTCTTCAA AAGAAATTTATTGCTTCATCAGTTTGAGACCATCCCGACCATGAGACTATGGTGCATGACTAAA AGGCTCAGTTTGGTTACTCTTAATACTTTACCAATAAAAACCTTAACCCTGACAACACAATGAC AGTTCGCGATGGCAATGAATTGTACTTTTCATTGGGTGAGGTGGTTTGTTGCAGGGTTGTTCCC ACAGCCCACCTGGGTTTGAATCTTGAATCTGGCAAATTTTCTCCTCGGGGATTTCTTGAACCTT TTCTTCTTAATTCCAAGATACCTAGCCTCCTCCTGGCTATTCCTTTTTTTTATTAATTGTATTT TTCACCATAATGTATTAATGAATTTCGCAGACTCCTTTTATCTTTGTAGACACCTCCTTTTAAT CTTAATGCAATTGGTTGGTCGCTTCTTTTGGCCAACCCGGCAAAAAAAAGGACTCATTTATCCT TTAATAAAGAATATCCATAACACTGAATCAGGTGCTTCCAGAAAAAAGGTCATGTGAGGATGTG CTAGCGTTGTTAGTATATGTTAGGAAAAGAGGCATGATAGTTTCCACGGTGAAAGAAAAATCAG CTAAAGCATCAGTTCCCTTTATTTACGAGGGGGAAAAAAGGATAAAACAACACCAAGAGATAGC ATCATACCCCAGAGGAACAAGTCACCATCTTGCAAAGCCGGCACCTGACCAAAGGGCTGCAGAG GATATCACAAGAAACAATGAGTTTAGCAAACAAATGTCATAGTTATCCCCCAAGTGCGACAAAT GTATTTATTGTCAAAGTTATGCTGGTGAGATAATCCTATGGATAGGGACCTTCACTCACGACAT AACAGATTCCAGAAAGGTGACATATGGTAACAAGTGTAAAAAATTAAATTGCTACATCACAAAC CAACTAAAAGCATACACATATAAATATATCACCATCAAACATGAGTAATATAAAGGAAGCTAAT GGTGGTGCCGGTGGTGAAATGTGCCAGCCCCTACCACCTCTTTGAGTTGCCAGGATTATCTAAG AAGTTGATATTTGTGCATGTGACTTTTAATAATGTCCTTTATGGATTGATGTTTGGTTGAAAAC TATATTTATTTTAGGAGTTCTCAAATTAAAAAATACGACATATTTATTAGAAAAATAGAAACCA TTACAATGCATGGGCATCTGGTTAGTTGTATAACAAACGTGTAAAAGATGGCATTCCCATCTAT TCCTCTGTTCAATGGTTGGAAGAGGCAAAAAGTCCATAAGTTGGACACTGAAAATGTTAGAAGT AATAGAGCACAGCCAGCAAATTTATATTGGTCAGGATAAGGCTGATGAAGCATGCAGAGTTGAT TAAAAAAATTTCTCCTCAAACAATACTGTACGGTCTACCAGACAATATTTACTATAGGAAACAC CTGGCAGCGACAAGTGGTCATCTACTACCTCCTTTTAAATTCTAAACCTCATCACCTAATTATC ACGCCTCCTTTGTTCCCCAGAAAATTAAATGGAGGCATTTGTTTGTTCTTTGCCTACCTATAGC TTCCTTCACTCCAGTCACTTTTCCCTTTCCCTTTCTCTCAAATGGATTTGGAGATCAGGAGTAA CTAGTTCACAAATTAACATGGCAGGAAATCGATTCTTATTAGCAATTCTCTTGAACAGTTTATT AGAAGAACTACAAATTTCTGTTCTTCGAACGGATATAAACAATAAACTTTTCCACATTTGATCC AGTTCACCTTCTCTCGAACAGTTTATTAGAAGAACTACAAATTTCTGTTCTTTGAACGGATATA AACAATAAACTTTTCCACATTTGATCCAGTTCACCCACCCAAATCTTGCTACATACTCTTGAAC TTAAAGCTGCGCACATTTATCATCAAGGCCTGTTTGGTTCACACCCTGAGAACAGGCGTCCGAT TTTGGTGGCCTGTGGTTGGATGCCAGTGAGAGCGCTCAGGTCAGGGCACCATCCAAACAAACCT CTCAAATAGAAAACTGGAGATCGTCTAAATCCCAGGAGCAAGTCAGAGAAGCACACCATAATTT CTTTGGGTCAACATCAGCCATTCGATCTAAGATGGACAGATCAGATCTTCCACTTGAGGGCTAT ACGAATACGACATCATCAAAATGGTAGCCTAATATAGCATGATCATGACATACCATAGTGCTGT GTGTACGTGGCAGCGTCGGTGGTGGTTGCAGGAAGTGAGGATGTTAGCCTTGTGGGGGGGGGGG GGGGGGGCGGAGAAAGGGTGGTTTGATGCTGAAGCAAGGATTACTACCGTCTACGCTGTGGATG ACAGAACCCAAAATTCGTGGTATTGAAGGATTACCGGAAGAAACTATATATACCTCTTTCATAT GTCTACTTGGAACACAGTACTTCTTAAACATATTTTATTTTCGTCTTAAACCTAAACGCCTCAT CGTAGAACTCCTAGACTTCTTATTGGGTGATAACTCCCAAGTCCCAAGATATTAGCGGCCGCAG CAAAATCGCTCCCGTTGACTGAAAGTGAGGGCATGGAAACAACATATCTCGTCGTCGACTGAGG GAAATCGTAACAAAAAGAAAGGAAACAACTAGCGAGCGAGGGGAGGGGCGGTGGGCACGTACGT TCCTGGCGAGGTGGTCGGGGGCCTTGTGCTCGCCTTTGGAGAAATCGAGCGGCACGATCTCGTA CTCGGCGCCGGCCTCCTCCAGCACCGCCACGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.096389879

Conservation Information
Conserved circRNAs	NA
PMCS	0.096389879

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os01g0764000_circ_g.20

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