Detail information of BGIOSGA017432_circ_g.2


General Information
CircRNA Name BGIOSGA017432_circ_g.2
ID in PlantcircBase osi_circ_015886
Alias Chr05:30684746_30689497(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 31081103-31085857  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA017432
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA017432_circ_g.1 BGIOSGA017432_circ_g.3 BGIOSGA017432_circ_g.4 BGIOSGA017432_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA017432-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCTGATCATTTAACTTTGCCGCCTGATCAACAAACTTTCTTTTGCTTGACTCCATATCTTCCT
CTTTATATATAGTCTCCAACATTCTTCTTTTAATATccaagtgaaacttctccagcaacagcca
tttcttgaaagttacgactaaacgtgctgtttatttttgaaacaagagtgcgcagagttggaag
ccatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAGTGAAACTTCTCCAGCAACAGCCATTTCTTGAAAGTTACGACTAAACGTGCTGTTTATTT
TTGAAACAAGAGTGCGCAGAGTTGGAAGCCATTTGCCCTAGGATATTGCCAAAGTCAAGTCAAG
TGAGGCAGGATGCCAAAAAAGATTTGGACAAAGTATGGTAATATAGCTGACAATATGAAAATGT
CCAGACCTTTGTAGCCTCTATATCAGAGTAGCATCTTTCACATTCTCCTTTATCATCTTCCAGC
TTTATGGATATTGATTCTATCTACACAGTTAAAATAGGTATTGTCACTGTCAAAGTAATCAGTG
TAGTAGTAGATTTAGGACGGGACTAGGCATTGGGCGCCCAGTAAAACACAAAAAATCAGGTGCT
ATCCCCATCTGGCAGCTGCTGCATGTTGCCTCCCTCTCACACTTTCTGCGTGCTGCAGCTGCAT
ATGCAAGCCTCTAAGTCATTTTTTGCAATGTACCCGCTCTACATTTCTCTCTTTGTACAGTAGG
CCAACCTCTTTTGCATGCACGCATGAAGCTCTATTTGCAAGCTTCAAATGTTTTTCTTTCTTTT
AAATTACTTAACAAATCTACGATCCGATTACTGTTGCAATTAAATCTAAAACAACATATCACAT
GATTATATTATGATGAAATGCCATTAAGTTCTAATAGAAACATTTTCATAGCACATGTGAAACA
TCGAGTATTTCCCGTAGATTTATGGGTAACAAAACCAGCAACATGAGAAATATACTGTGTTGCA
AAAGCAGCATTCTTAAATAGTCCAACGCTCCGATCTCCTTTATCTGCTATACTACCTTATTAAC
ATATAGTATAATGACAAATATATAAGAAAAGAAAAACTGAATGAAGTATCTTCTCTGCACTCAT
ATGGTGGCCGAAATTTTGACAAAATGACCCTTTTAGAAAACTTATTTGAAGAATAAACCTTGGT
AAAAACTAATTGCAAAAATGAACCTTTGCCTCAGCACCAACGTCATCAGCAAAGCTAGCCTAGC
ATGGTGGGGGAGGACATCAGCTGTGTGCCAGCCTACCAGGTGGTGTTGAGTTCGATCCTCCATT
CCTCCACCACAATACTCATATTCTTTTAAGAAATGGCATGTTTTATTTGCAAATTTATTTATTT
TGATCTAATATTCTTTTCATAAATGACATGTTTAATTTGTAAATTTATTTATTTTGAATTTGAA
AAAATATATGAAAGAACTATAAGTTGTTCTATTATCTGAGAAAGAACACAAAAACATAATGTGT
ATGTGTATATATCTGGCGATGTGCTTACTACTGACCATCACCATTGGAGTTGATTTTGGTCGAA
TCCTTGGCAGGGTCAGGATAAACCGGCGAGGTCAACAGATCAATGCCTTTCACGGGAGATAGCA
GGCTAGCGAGTAACAGGAACATGGTGAATGCGAGCAACGAGCTCTTGAGGCCATTTTACATGTG
GAAATACTGGCTATTGGATGTGGATGTACGCCTCTGTCTATTTGAGCAAACATTTTGTAAACAA
ATATTTCAAATCAAGCAAAAAGAAGTATACTAAAAAGAAAATTAGGAAAGTAAGAGAAAACAAA
AAAAAGGTGTGGAGGGAGGGGATAATCGAAATCGAACCCTGCACACTGTTTATAGCTGACGACC
TCCACCAACATGCTAGGCTGCTTGGAGCTGAGCTCTGATGAGTCAGCAAACCTGGGGCACCTTG
GACAAGAGCTCAGCGCCGTCGAGGCTGGCGCGGAGTCAAAGGTTCATTTTCTCAATTAGTTTTT
GCCACGTTTATTTTTTAAATTAGTTTTCTAAAAGTCATTTTGTCAAAATTTCAGCATATAGTGC
AATATTCTGTCTGTAAGGAAAAATATTCCCACATGGGAATCCTGAAGGAGATCACTATGGGGAA
TTCAAAATTTTTAATACTCTTCAGGAAATAGTCCCTTTAATAATACCAACATGAAACCTCAGAC
TCTAGCTTATTTCTGTTTTGTCTAGAAGCAACTCTGCAGCAGTATTAGGAGAAAATAAGGGTCT
CTCAACTAACTGCTATGAAGGCACCACCCAGTCCTATTCTGAAAATACAAAACCTGCTGGGTGG
CTAGGTGCTATTCCTGATGAGACAAACTGATGCTGAACAACTTATGCATATTGCAACACTGGAA
GTAAAGAAAGTATGAAATAAAAAAGAGGTACACTTATTAATCCATTGTACCTCACGCTGCCGGC
TTTGATACTCCAACAAAACATTTTGATTAAGAAAAAGCATAGAATTTGCTTCGGATTCAGTATC
TTGAATTGCACAATCCAGTTCTTCTATGGTAGTAGGCATCTGCAAACAGAAACAGTGGAAGCAG
GATCGTGGGTGCTAAGTGCCAGCATATGCTGATAATACATGTGGTTTTTTTGGCCAAAGTAAAT
GGCAATGCATCTCAAATTATTCACATAATAATAAAAAGGAAAACTGGAAGTAATAGAGAAAACA
ACATAAGAAATCCAGTTGTAAACAGCAGATAATTAGAGGGACATCATAAATCCTAAACAACCAA
ACAAGCAGTGAGGATCTTTTACTGTGGCCTTATGGAGCATTCCAACAACTAAATGAGCTAAAAT
CAGAAGAGTTAATTCTTATGAGAAGAAACTAACACCCTAGAGCATAGGTGCTTCAGACAGAATT
CAGCCATTCGTGGTTGTTTGAACATCAAGTTGTTGCTACTGTAGTTGCCAGAATCATGATCTGT
TGGTTCCTGGTACGTGTCCCTGCCTGCGCAATTCATCACTTGACAAACCTAGGATTTAGCAAGA
GGGATGTACCTCTCCTATTTATGAATCCAATCTGAGGTTCATAACCCAAACAATGCCACAAAGT
TTCATTGAATATCGAACCGTGGCCTTATATTAAAAAGAAAAGGTAAAGGTAAAGGAGCTTGTAG
TTGACTGGCTCAGCCCAGCAACATCGTTAAGCTCATCCTGATTGAGTTCCTGCTTGACTTTCAC
GGTACGTGCAGGTAGATCGCTGGTAAACCCCAAATCATGTGATCTGATTTTGGGTTTGACAAAC
TATGCTGCAAATCTGGTAACTAAGGTTTTGTGATAAATTTATCATTAAAAAAATAATTTTATAA
AAGGATCTAGTGGTTGCAGATTAGGGAGATTTTACAGTTGGTATGCTAACTCAACTAAAATATG
TGAATGCTGATTCACAAATAAGACAAGAAAAGTACAAAATTAAATTCAAACAGTACCTCAAGAA
ACTTTTTTGCAAGGTCTTCGGTGATCATAGCTATTGACTCTGCATGCTGTTTTGCATTAGACAA
CTGCTGCTTATGCTCTTGAGTTTTTCTTTTACCTGATTAGAGGAACATATGTCATGTGATAGTG
CCAGCATGAGACAAATGGAATCAATCACGAAAGTAATGTATTGCCAACTTGCCATATGCTACAC
TACTCTCAATCATTACAGAAATGAAATTTCCTACAAAGGCCTTTATAAGCTTGCCAGGCACATT
CAACCGCAGTTGACCATTTATAGTACCAGTCTCAAAACATAGTTGTCTTTATTCAAAACTCAAA
AGCCCAAGAGAGCATCTGTTCAACTTTGTCAGTCAATACTTAACAGATTCTTAGAACACCTCAG
AAAATAAAAATACACTTTTTTATGTAGAGTAGTTGTTAACTTACGACATGTTAGAATACCCATG
ACTTGCCTGGGACTAAAGTCTAACGTTGTAGAATATTAGATATATCCATTCCAAAATCAGCAAG
AACTCACATGGTTCTGATATAGCTATACTTCAAAAAAAAAATCTACTCAGGAGATGCATGATGG
ATTTTGAATAGTCTTCACCTCTACAAACCAAACAGACCTGAGGAATGAGCATGACATGAAAGTG
AGCATAAGATTTGTCAACCCAAAGGCAAAAACTCAAAGAAAAAATTGCCTTGGACCCTAAGCCA
CTTTCCAAAATATTTGCCAAACTGAGTGGTTAGAAACAACAAAAGAATGGATTGAAACATCAAC
TCACAGTTTTCATATTCTTTAGCAGCTTCAATAGCATTCTTTTCAAGTTTCTTCACATCCTTTT
CCATCTCCCATATCTATCAGATGATTAATGAAGGACAGATGATTACATGTGCGAATTGTTTCGG
TACAAGGAACGGGATAAGACATAAGCAAATATGGCAATTTTCTGGTGTAACATGTGCAAATTAT
GTGTGCTTTAGACCAAACTAGTATTTTAGTAATTTATATATCTTATTGCAAGCAGCCAAACATT
TGTAAAACAGCTGTGATTAATTGGGTGATTAATTGCAAAGTTTCCAAGCGGAGATTAATTGGGT
CACTGCAAGGTAATCAAAATGCAAGAAATATGCACAGTTCAATTCAAGAAGTTTTGTGTTATGA
AAGTAACTAGTTTCTCACAAAGCATACCTTTGTATCGAGCTCAATGGAAGCCATGTTCTTTTGT
GTGCAACTCCATTTGAGAGCAACAGCTTCAATAAGTAAATCCTGAGAGAATTTAAATAAAATTT
ATGCAAGCACAAATGTGATGATGATCTTCAAGATAAACAAAATATTGTATCATCGTCAGAAGCT
CCAAGCTCTGTTAAGTGCTAACCTTGAGTTTTAGCACTAGTTCATATCGCTGATCATTTAACTT
TGCCGCCTGATCAACAAACTTTCTTTTGCTTGACTCCATATCTTCCTCTTTATATATAGTCTCC
AACATTCTTCTTTTAATAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021