Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA034621_circ_g.1 |
| ID in PlantcircBase | osi_circ_002997 |
| Alias | 11:347802|351997 |
| Organism | Oryza sativa ssp. indica |
| Position | chr11: 347802-351997 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA034621 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA034621_circ_g.2 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA034621-TA:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
351003-351972(-) 351989-347860(+) 351924-347807(+) |
| Potential amino acid sequence |
MLIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKG ISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPRKFFNIVD PLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPD VQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQNGWNYVAENKERKSV SGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEGHDALDLFNESESGTKAGIK YGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDLTGDYTTNFNNLLYAQGFHQDYPM NQYYPFGPVYYPIPSPPPARYQNRRSSNGHSRNNVYGYAGTNGIGPAPCPPGYLIMRPYSQIDD SNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLPHNHQRPHHYGRADMSADLTPSEELRHIYD PDANDLGIPSSLRISIPSPSSEAPREIVHGNGFIQPPAKKLEFGTLGALPLEVTSQELGINRLN TASDSQPSASASPMSLANNPGISSNQMRSFHLDLFR*(-) MERPHLIRTNSRIICQRHRACRR*(+) MAKGSQINISIRKISFQRNRSKWKDLI*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |