Detail information of BGIOSGA034621_circ_g.1


General Information
CircRNA Name BGIOSGA034621_circ_g.1
ID in PlantcircBase osi_circ_002997
Alias 11:347802|351997
Organism Oryza sativa ssp. indica
Position chr11: 347802-351997  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA034621
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034621_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA034621-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTGCTAAAATTTCATCACTTGAATGGCCAAAGGCAGTCAAATCAATATCTCCATCAGGAAG
ATAAGTTTTCAACGGAACAGATCCAAATGGAAAGACctcatttgattagaactaattccaggat
tatttgccagagacatagggcttgcagacgctgaaggttggctgtcggaagcagtattcaatct
gttaatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTTGATTAGAACTAATTCCAGGATTATTTGCCAGAGACATAGGGCTTGCAGACGCTGAAG
GTTGGCTGTCGGAAGCAGTATTCAATCTGTTAATACCAAGCTCTTGGGATGTAACTTCCAAAGG
CAATGCTCCCAAGGTCCCAAACTCAAGTTTCTTAGCTGGAGGCTGAATAAAACCATTGCCATGC
ACAATTTCCCTTGGAGCTTCCGAAGATGGAGAAGGTATTGATATGCGCAGTGAAGAGGGGATTC
CCAAGTCATTTGCATCAGGATCATAAATATGTCTCAATTCCTCCGAAGGAGTCAAATCTGCTGA
CATATCAGCTCTACCGTAGTGGTGTGGTCTTTGATGGTTATGTGGCAGGAAATGAGTTTTTCCC
CTTCCGCCTCGTCCAGAAGGTGATCTGTCTTTGGACAAGTTCTACAAATCGAACAAGGTGAACA
AAGTCAGCAAAACACAAGGCAGCACCTCAAAATGACACAAATATAATGGCTAACCCTGCAAAAT
GAAAAAAGCTCTGCAGCAGAAACATAAAACTAATGGGGGTATGCTCTATACTATATTCTATAGT
ATGGCCAAATCCAACAATGAAAAATTCTCACAAAATATAGCAACTTTTGAACGGATGGGACACA
TCCTAGTACTACGAATCTGGACAAAAGTTGTTATATTTTGGGTCAGAGGGAATAGTAAATTATT
GAATCATGCATTGATATGCATAGTATGTGAAAAAAAGTGCCAAAAGTTCACACAAAATGAGGTT
TAAAGTTGTACTTGTTAGAAAGAATAAGGATATACTATTCACAAATGTGCATCTTCCTTAGCAA
TTTGAGTTATATAGAAGGTGTATTATCTACCACTTGTGCCAAACCTAGACTCTTAGATGGTTCA
CAAAGCTCAAGGAATTCTATGTGCATAACACGCTTAATAATATGAACATAAGATCATGAAAGGA
GGAACATACTGGGTTAGGGAAGTATGTGCCAGTTCCACGAGCTCGATTTGAATCATCAATTTGA
CTATATGGCCTCATAATTAAATAACCTGGTGGACAAGGAGCAGGGCCTATTCCATTTGTACCAG
CATATCCATACACATTATTTCTGCTATGACCATTTGATGATCGCCTATTCTGATATCGTGCAGG
TGGAGGGGAGGGTATTGGATAGTACACTGGACCAAATGGATAATATTGGTTCATTGGATAATCT
TGGTGGAACCCTTGAGCATAGAGAAGATTATTAAAATTTGTTGTGTAGTCTCCAGTGAGATCTG
ACCAATTGCTATCGATGGTACCTCTATCATCATTATCCACCTCTTCAAAGGACTGGTGGGATCT
GCCTGCATAACTCACTGTTGACATTCCATGGTGTGATGGGTTTGTGCCATACTTTATGCCAGCT
TTCGTACCACTTTCTGACTCATTAAAGAGATCCAGTGCGTCATGACCTTCCTCAGATGGCAAGC
TATGTGCTCCGGTAATTGATGGTGATGCGGGCTCACAAGAGTCACTGCCATTCGTCATACCAGT
TGAATTAGTAGCTGCAGGATTTGTTGCTTTGCTTGCCAGCAAGCCACCAGAAACAGACTTCCTT
TCCTTGTTCTCAGCCACATAATTCCATCCATTTTGCCTTAGTGACCCATGGTTGCTGGAATCTG
AAATGCTGATGTTATTGAACTCATCAGATAGATCACCAAAGGAATTATTACTGTATAAAGGCGA
ACTATCGTTGTCGGCTCTTTCACCATTGAAGTCCAGAGCTATTTCTTGCACATCTGGCCTTACC
CTACTGCAGTGTCTCTTCAATGTGTTCCTGAAGAATTGATTCACTTCATCCATAGTAAAATTGT
CAGGCACTTGAATAATCTTCCCAAGCTTCCGGGCACCAAAATCAAATGCACTGCGTATCCGGAG
GAAGTTACCTGTGCTTTGCACAACGGGATCAGGCCAGGTAAACTAAATGACAAAATACTATGTC
CATAGCGACTTGAATAATGTTGAGGACAAAACAAATAGCACTGCAACAGCTTAATGCACATAAG
CAATTGTGCAGTATAGCAAAAGGAAGTTATGCATGTGAGCAAATACCCATGTAACAAACAACAA
TTGAATGACTAACTTACAGCATGTCAGTAAGCAGCATGTATGGTATTAAAGTAAGGTGGTCCAG
GGGCACGTCGCATACACTGGCATGCAAATATCCAATGTACTAAGTGTTACTGCTTAGTTAAGTG
GCATAGAGTTTCTTTTGTGCTTAATTGTTCTAAAATCTCTTGGCCCATGGATAAATAGCTTGTG
AACTAGGGGGCGCAGCGACAATTTATCCCTTTTGCATGCACAGTAAATGCCCAAAAACTAAGCT
ATCTGGAGCATAAGTACTAAAATTTGACAAGTAAACAAGCATTCTTCCCTGAGAGACCAATCAT
GGGATGAAGATGAATTTGAAAACAACTGTGAAGTTACAACAAACAAGTTGACACATCAATTTTT
CCAAAATTGACTAAAGTTGTGATATTTCGAAGACTAATCATCCAATCCTACCATCAAAACACAT
GATCTAGATGTAAGAAACAAACCTTTGCTGACACTGCGCCCTAGATTGTTACTCTGCTTCAATG
GATCCACTATGTTGAAAAATTTTCGGGGAAAGACCTGAGTATTTTTCTCAGAGTTTCTAGGAAG
TACAGTAAACCACTGCGCACATTCCTTGAGAAAGTCCTCTCGCATAGTAAAATCATCATTAACA
GTGTCTGGAGAGTCAGCTGTGAAAAAAAAATAAAGTTTGCATGACCAATGAAAAAAAGAAAACT
TCCAATCACAAAAAAAAGAGGTAACATATCAGACCACATCCACTTACTAACTAGCTCAGGCAGG
GAAGACAAGGAAATAGGGCCATACAAGCTTATACCCTTATTGTCCCAGTCAAATTTGCTATAGT
AGTCCAGAAACCTATAGAGAACCTGCAGAAAACATAGAGTAATTTATGGCAACGTATGTAGGGT
GTCAGAAACAAGAACTTTACTAATGCTGCAGAATAGTTGGAAGTCAGAACTTACAGCTAGTGGA
CCATCCAATGTTCCATGGAAGAGATGGAAAATATATAACACCAATATCTCCAATGCATAGGTAG
AAATTAATCCATGGTGAGCACCAAGAATGCGGCTTTCATAATAACACCAAGCTTTTATCAGCAT
TATACTTCTCTTGAAAAGGTGGTATTTTTCAAATTTTTGATCAACCTGCAAAACGTAATGGTTA
TAGATATATTTTCCCCTGAGCAGTCTGACCTTAAAGAAATCATCTTCCAACTGTTGAACCACAC
AAGGAAGTACAACGGACCTAGCTTGTGATAAATTAGACCGAGATAGATCTGCAGTTTAAGGAAG
AGAACTGGCAACTGCATATTTGTTGCAACTTTTCAAACATTACCTTCTCGAGAAAACAAAGGGT
ACACAGTCCACCAAACTGATTGAATGAGATGTCTACAATGATGTTTTGAACAATGCATTTCACC
AACTTGACCTGCCATCAGAAAGACTTATTTTAGACAAACATGATGCCATCAGAAACATTAACAA
TGTGCGAGAACACGTAAATCTATGTTGAAGCATGCATTAGTTGTTAAATGACAATAGAGCACAG
TGGTGGAAAGTTTACTTGATCACTATTGACTATTTATTTTTATTGCTAGCAGTGAAATATTGAG
ATATGCACAGGCTTCATTGATGTCATGTGAATACGATGGATTTCTCTATTGTTGTTTCCCGTTT
TATAGTAGGATAAGAATACTGCGAAATGTTTGATTGCAGCTATAAGAAGGGGAGTAAAAGAAAA
AAGAAAAGAATTCATGTATTAATGAATCACATGGATGGTTTCATGTGATCTTATATAATAAACA
CAATAGATAAGCACACATAAGTAGACACCACTACCAGAAACATAAACGCATATGAATTAGACAC
TAACTAATATATAAACTAAAAAACAAAGAGCATCAAGAGAAAAACCTCTGCATGAATATATTGG
ACATCCTTGACTTCAAATTCAGCGTCTTTCCTTGCCTCTTCTGATTCTAAAACAGCCTGTACTT
GTTTTGCTAAAATTTCATCACTTGAATGGCCAAAGGCAGTCAAATCAATATCTCCATCAGGAAG
ATAAGTTTTCAACGGAACAGATCCAAATGGAAAGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 351003-351972(-)
351989-347860(+)
351924-347807(+)
Potential amino acid sequence MLIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKG
ISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPRKFFNIVD
PLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPD
VQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQNGWNYVAENKERKSV
SGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEGHDALDLFNESESGTKAGIK
YGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDLTGDYTTNFNNLLYAQGFHQDYPM
NQYYPFGPVYYPIPSPPPARYQNRRSSNGHSRNNVYGYAGTNGIGPAPCPPGYLIMRPYSQIDD
SNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHFLPHNHQRPHHYGRADMSADLTPSEELRHIYD
PDANDLGIPSSLRISIPSPSSEAPREIVHGNGFIQPPAKKLEFGTLGALPLEVTSQELGINRLN
TASDSQPSASASPMSLANNPGISSNQMRSFHLDLFR*(-)
MERPHLIRTNSRIICQRHRACRR*(+)
MAKGSQINISIRKISFQRNRSKWKDLI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021