Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06150_circ_g.3 |
ID in PlantcircBase | ath_circ_000941 |
Alias | At_ciR5303, Ath_circ_FC0211 |
Organism | Arabidpsis thaliana |
Position | chr1: 1869863-1870009 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G06150 |
Parent gene annotation |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G06150_circ_g.2 AT1G06150_circ_g.4 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06150.2:1 AT1G06150.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.211160461 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1870004-1869865(-) 1869903-1870006(+) |
Potential amino acid sequence |
MQHKDTGTLGISSTEQGSSWAVEIGGHLQVCSIMVENLDKEGVMLIELQMQHKDTGTLGISSTE QGSSWAVEIGGHLQVCSIMVENLDKEGVMLIELQMQHKDTGTLGISSTEQGSSWAVEIGGHLQV CSIMVENLDKEGVMLIELQMQHKDTGTLGISSTEQGSSWAVEIGGHLQVCSIMVENLDKEGVML IE(-) MIEHTCRWPPISTAQLEPCSVLDIPRVPVSLCCICNSISITPSLSRFSTMIEHTCRWPPISTAQ LEPCSVLDIPRVPVSLCCICNSISITPSLSRFSTMIEHTCRWPPISTAQLEPCSVLDIPRVPVS LCCICNSISITPSLSRFSTMIEHTCRWPPISTAQLEPCSVLDIPRVPVSLCCIC(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |