Detail information of BGIOSGA021966_circ_g.1


General Information
CircRNA Name BGIOSGA021966_circ_g.1
ID in PlantcircBase osi_circ_006513
Alias 6:2302725|2303044
Organism Oryza sativa ssp. indica
Position chr6: 2302725-2303044  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA021966
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA021966-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGATAACTTATTCATGTTTGCAATTGCTTGGTCACGCTGAGATGACAGAGATGGCTGGTGGA
ATGACACATTTGCTGACCCATATGTGTCTCCCCATTctggtcatgagaatgtttcagatttgtt
gccatatctgacacggatgcctgatcagagttatcaaatgaacgatctctattgaagctcttat
agatagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTCATGAGAATGTTTCAGATTTGTTGCCATATCTGACACGGATGCCTGATCAGAGTTATCA
AATGAACGATCTCTATTGAAGCTCTTATAGATAGAATTCCCACTGCTGCTGCTACTGAACCGTG
TTTCTGAATTGATCGAGTGTGAACTTGTCAGGACTGTATCATCATGGTTGGAGATCTCACTCCC
ACCACTGCCTGAAGGGCTAGCTCTCCTGTTGGATAACTTATTCATGTTTGCAATTGCTTGGTCA
CGCTGAGATGACAGAGATGGCTGGTGGAATGACACATTTGCTGACCCATATGTGTCTCCCCATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 2302734-2302980(-)
2302963-2302960(-)
2302989-2302760(+)
Potential amino acid sequence MTRMGRHIWVSKCVIPPAISVISA*(-)
MNKLSNRRASPSGSGGSEISNHDDTVLTSSHSINSETRFSSSSSGNSIYKSFNRDRSFDNSDQA
SVSDMATNLKHSHDQNGETHMGQQMCHSTSHLCHLSVTKQLQT*(-)
MTEMAGGMTHLLTHMCLPILVMRMFQICCHI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021