Plant Circular RNA Database

Detail information of Os10g0473600_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os10g0473600_circ_g.3
					
						ID in PlantcircBase
						osa_circ_007086
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 17587074-17589747  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0473400						
					
						Parent gene annotation
						
							Beta-glucosidase, GBA2 type domain containing protein. (Os10t047
3400-01);Similar to predicted protein. (Os10t0473400-02);Similar
 to catalytic. (Os10t0473400-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0473600_circ_g.4 Os10g0473600_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0473600-00:3
Os10t0473400-02:8
Os10t0473400-01:8
Os10t0473600-00:3
Os10t0473400-03:8

General Information
CircRNA Name	Os10g0473600_circ_g.3
ID in PlantcircBase	osa_circ_007086
Alias	NA
Organism	Oryza sativa
Position	chr10: 17587074-17589747 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0473400
Parent gene annotation	Beta-glucosidase, GBA2 type domain containing protein. (Os10t047 3400-01);Similar to predicted protein. (Os10t0473400-02);Similar to catalytic. (Os10t0473400-03)
Parent gene strand	-
Alternative splicing	Os10g0473600_circ_g.4 Os10g0473600_circ_g.5
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0473600-00:3 Os10t0473400-02:8 Os10t0473400-01:8 Os10t0473600-00:3 Os10t0473400-03:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TACACAAAGACAGAAGTTGGGAGGCTGCTATCTTTGTAATCATGAGGAATGAATGGTGATATCT
GACGACATGAGATTTTAAGGTCTGGATCCGGTTCACcattctggaagtttttcattcttgagta
tggggttttgccacttctcaatctcctcttcccaaatcctatattctgcaaaaaaacatagaag
gaacatcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATTCTGGAAGTTTTTCATTCTTGAGTATGGGGTTTTGCCACTTCTCAATCTCCTCTTCCCAAA
TCCTATATTCTGCAAAAAAACATAGAAGGAACATCCAACAGCGTAAGGTCAGAAACCAAGGACC
AACATTGCACATCTGTCCCTATCACAGCATCATTTAACTTTGTTGAGAATGTGTGAATTACGAC
AGCAACAAGTAATTACTGCATTGTGTGTGAATGTGTACAAGATTAAGATGTCTAAGTGACTAGA
GAAGATTTATGAAGAGCTGGACAAAAAGACATACTTGTCAAGGCATCGTGTACCAAATTAACAG
CTGATCTTTCAGAAGTTCCATAAAATTCAGTGTACCTCCTGCAATATAAGATAGAATATCAATC
GATTAGAAGGTATTGTAATGCACACTAATTTTAAGTTTGACATGTGGAATTCACTTGCTATGTA
CTCTTAACAGATAGCAGTGAATATATTTTTGTGATATAAAAAAGAAGCTACCATGGGGAAAAGG
CTAATTATGTATAAGCAATGTGATAGATAACTAAATAAAACAAGCCACCACAATTGGTCAATGT
GAGATATTTAACCATGTTGTAAGATATACTGGTATTTCTCTACCAACTCAAAACAATAGGTGTT
CATGATGCATTCCCAGCTCTTCACTTCAAGAGATCTTTTCTGAACAGATCTATGAGAACTTGTG
CTATTATATGACTTTTTTTGCCCAAGGATTAACAGAACGTATGGTACATTTATTTGGGATCAAT
TACATGTCATAGCACATGGGGCTATGCCGGTCTAAGATGAATTTGCAGATAGGTCATATAGGTG
ATCCGGAGTTCAGAAACAAAGAATAACTCACTGTAGATATAAACAAAATCAGCAAAGGTACCCA
AACCAAGAGTGTGCTGACCTGTTGTATGTGCAGCCCTTCTGAAACTTTATTTTAGGAGAGGACC
AAGCCAAACCAAATACAACAGTACATCTACCATGTGGCTCTACCCAGGTTGATGCTGAGACAGC
TGCACAAAGTGTCTCCCCTGAAGATGAAGGCATACTGGTACCAGCTTCGAAATTTTCACGGTCA
AAGTGGCCGTTCTGAAGATAAAGTAAAAGGTGAATGAGAGGAATATTTAGTTATGTCAGGAACG
TAGAATTGCTGCACTGAACCACTGTTGAAAGAAAGGCTGCCATCGATCACCTGTTTCATTCTAT
CCCACATTTGCTTGGCTGAATCATGGCCTTCTCCAGAGAGGCCAAATACAGGCAAGACTGTCAC
ATTCACATTCTGAGTTTCACAGGCAGCAATAGCAAAAGTAACCGGAGGATTATCCTTTGCTGTT
CTGCAACAAATGCTAGTCTGTTAGCTCGTGCAGGCAACACATGATGCAAGAATATGTGGAACAA
GGGAGAAGGTTTGGTTTGACACTTGCTTGTGATGCAGAAGAACTCCTGAAACTCCATCCTCCGC
ACTGACCATGTTATGAAATCAAGCCATGAGCACCACTGATCTAAAAGTATGAACAGGTATAAAA
AATATCTACAAATTACTTACATGAAGGGCTCATTAAAATGGCCTCCAGAGTGATGAGAAAAACC
TCCGATAGAATTCTGCGTTTAATGAGAGAAAATCATTAATTAGGCACTTGAAGCAGCAACAATA
ATTTTTCAAGTAAATATCAAGTAAGGATGAGAGTTATACTAATGAAAATGTCCAACATTTTTCA
TGGGTGTTTTGCCATCATGGTACTATTGTTGCACTAGTATATATAAACTATAAAAACTTATGTG
AGCCACAAAGTCTAAAGCACAGTAATGCATAAGTAAACATAAATGGTGATATACTGATAGATGC
AGAAAATATATTGTTACAGAAGATTTAGATGTCCTTACCGCCCATGTCATTAACAGGCTCACTT
TCGCACGGTCTTTCCCAGTGTTCACTAGCTATAATAAACACAGAAAACAAAAGGAAGGATGGTC
ATGTAATTTCATCAGGTTGAGAAGATTAAGAGCATCTCTTCATGTAAATACATATGAAAACTTA
ATGGGAACATTCAATTCAGTAGAATATTCATTAATCAGTAACTCCTCAAGTAAACAGCATGTCC
CATGATCTAAGAACAATCACTGTAATTAAACATTTTTCTATATAACTGTATTCTGAAATGTTTT
GACATATATGTTCGCACCAACAATATTATTTTAACAGTGACCATGTTAAAATTCTCCTGTCGAC
ATAAAAAGGCAGGGCTCTCTCTACCTTATGATCCATGTCAGAACTGTTACATGTGGAATATCTT
GGCTGAAGTTGCCAGAACATATTTCTTAATATAAATGTTATTGAACCAGTATCAGATTCAAGCA
AGAATTAGAGCGAGACATGGTTAATCCCCTAGTTCCACAAACCTAATCCCAACTGTTATCAACA
CCGATCCACATGTATATTCCATGATATTATCTAAAGGAATATACTTATCAGGAAATATGAAATA
AAAAAAGATGAGGGAAATATACCAGCTGAAGAACCTGCCAGCCTAGCATAAAACTAACTTTATG
AGTCACTTACAGTGTACACAAAGACAGAAGTTGGGAGGCTGCTATCTTTGTAATCATGAGGAAT
GAATGGTGATATCTGACGACATGAGATTTTAAGGTCTGGATCCGGTTCAC
						
					

			
		

Sequences
Splice junction sequence	TACACAAAGACAGAAGTTGGGAGGCTGCTATCTTTGTAATCATGAGGAATGAATGGTGATATCT GACGACATGAGATTTTAAGGTCTGGATCCGGTTCACcattctggaagtttttcattcttgagta tggggttttgccacttctcaatctcctcttcccaaatcctatattctgcaaaaaaacatagaag gaacatcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATTCTGGAAGTTTTTCATTCTTGAGTATGGGGTTTTGCCACTTCTCAATCTCCTCTTCCCAAA TCCTATATTCTGCAAAAAAACATAGAAGGAACATCCAACAGCGTAAGGTCAGAAACCAAGGACC AACATTGCACATCTGTCCCTATCACAGCATCATTTAACTTTGTTGAGAATGTGTGAATTACGAC AGCAACAAGTAATTACTGCATTGTGTGTGAATGTGTACAAGATTAAGATGTCTAAGTGACTAGA GAAGATTTATGAAGAGCTGGACAAAAAGACATACTTGTCAAGGCATCGTGTACCAAATTAACAG CTGATCTTTCAGAAGTTCCATAAAATTCAGTGTACCTCCTGCAATATAAGATAGAATATCAATC GATTAGAAGGTATTGTAATGCACACTAATTTTAAGTTTGACATGTGGAATTCACTTGCTATGTA CTCTTAACAGATAGCAGTGAATATATTTTTGTGATATAAAAAAGAAGCTACCATGGGGAAAAGG CTAATTATGTATAAGCAATGTGATAGATAACTAAATAAAACAAGCCACCACAATTGGTCAATGT GAGATATTTAACCATGTTGTAAGATATACTGGTATTTCTCTACCAACTCAAAACAATAGGTGTT CATGATGCATTCCCAGCTCTTCACTTCAAGAGATCTTTTCTGAACAGATCTATGAGAACTTGTG CTATTATATGACTTTTTTTGCCCAAGGATTAACAGAACGTATGGTACATTTATTTGGGATCAAT TACATGTCATAGCACATGGGGCTATGCCGGTCTAAGATGAATTTGCAGATAGGTCATATAGGTG ATCCGGAGTTCAGAAACAAAGAATAACTCACTGTAGATATAAACAAAATCAGCAAAGGTACCCA AACCAAGAGTGTGCTGACCTGTTGTATGTGCAGCCCTTCTGAAACTTTATTTTAGGAGAGGACC AAGCCAAACCAAATACAACAGTACATCTACCATGTGGCTCTACCCAGGTTGATGCTGAGACAGC TGCACAAAGTGTCTCCCCTGAAGATGAAGGCATACTGGTACCAGCTTCGAAATTTTCACGGTCA AAGTGGCCGTTCTGAAGATAAAGTAAAAGGTGAATGAGAGGAATATTTAGTTATGTCAGGAACG TAGAATTGCTGCACTGAACCACTGTTGAAAGAAAGGCTGCCATCGATCACCTGTTTCATTCTAT CCCACATTTGCTTGGCTGAATCATGGCCTTCTCCAGAGAGGCCAAATACAGGCAAGACTGTCAC ATTCACATTCTGAGTTTCACAGGCAGCAATAGCAAAAGTAACCGGAGGATTATCCTTTGCTGTT CTGCAACAAATGCTAGTCTGTTAGCTCGTGCAGGCAACACATGATGCAAGAATATGTGGAACAA GGGAGAAGGTTTGGTTTGACACTTGCTTGTGATGCAGAAGAACTCCTGAAACTCCATCCTCCGC ACTGACCATGTTATGAAATCAAGCCATGAGCACCACTGATCTAAAAGTATGAACAGGTATAAAA AATATCTACAAATTACTTACATGAAGGGCTCATTAAAATGGCCTCCAGAGTGATGAGAAAAACC TCCGATAGAATTCTGCGTTTAATGAGAGAAAATCATTAATTAGGCACTTGAAGCAGCAACAATA ATTTTTCAAGTAAATATCAAGTAAGGATGAGAGTTATACTAATGAAAATGTCCAACATTTTTCA TGGGTGTTTTGCCATCATGGTACTATTGTTGCACTAGTATATATAAACTATAAAAACTTATGTG AGCCACAAAGTCTAAAGCACAGTAATGCATAAGTAAACATAAATGGTGATATACTGATAGATGC AGAAAATATATTGTTACAGAAGATTTAGATGTCCTTACCGCCCATGTCATTAACAGGCTCACTT TCGCACGGTCTTTCCCAGTGTTCACTAGCTATAATAAACACAGAAAACAAAAGGAAGGATGGTC ATGTAATTTCATCAGGTTGAGAAGATTAAGAGCATCTCTTCATGTAAATACATATGAAAACTTA ATGGGAACATTCAATTCAGTAGAATATTCATTAATCAGTAACTCCTCAAGTAAACAGCATGTCC CATGATCTAAGAACAATCACTGTAATTAAACATTTTTCTATATAACTGTATTCTGAAATGTTTT GACATATATGTTCGCACCAACAATATTATTTTAACAGTGACCATGTTAAAATTCTCCTGTCGAC ATAAAAAGGCAGGGCTCTCTCTACCTTATGATCCATGTCAGAACTGTTACATGTGGAATATCTT GGCTGAAGTTGCCAGAACATATTTCTTAATATAAATGTTATTGAACCAGTATCAGATTCAAGCA AGAATTAGAGCGAGACATGGTTAATCCCCTAGTTCCACAAACCTAATCCCAACTGTTATCAACA CCGATCCACATGTATATTCCATGATATTATCTAAAGGAATATACTTATCAGGAAATATGAAATA AAAAAAGATGAGGGAAATATACCAGCTGAAGAACCTGCCAGCCTAGCATAAAACTAACTTTATG AGTCACTTACAGTGTACACAAAGACAGAAGTTGGGAGGCTGCTATCTTTGTAATCATGAGGAAT GAATGGTGATATCTGACGACATGAGATTTTAAGGTCTGGATCCGGTTCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.110781482

Conservation Information
Conserved circRNAs	NA
PMCS	0.110781482

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17587094-17589746(-)
17587078-17589020(-)
17588981-17589746(-)
						
						Potential amino acid sequence
						
							MKNFQNGEPDPDLKISCRQISPFIPHDYKDSSLPTSVFVYTLVNTGKDRAKVSLLMTWANSIGG
FSHHSGGHFNEPFIAEDGVSGVLLHHKTAKDNPPVTFAIAACETQNVNVTVLPVFGLSGEGHDS
AKQMWDRMKQNGHFDRENFEAGTSMPSSSGETLCAAVSASTWVEPHGRCTVVFGLAWSSPKIKF
QKGCTYNRRYTEFYGTSERSAVNLVHDALTKYRIWEEEIEKWQNPILKNEKLPEW*(-)
MVNRIQTLKSHVVRYHHSFLMITKIAASQLLSLCTL*(-)
MTWANSIGGFSHHSGGHFNEPFIAEDGVSGVLLHHKTAKDNPPVTFAIAACETQNVNVTVLPVF
GLSGEGHDSAKQMWDRMKQNGHFDRENFEAGTSMPSSSGETLCAAVSASTWVEPHGRCTVVFGL
AWSSPKIKFQKGCTYNRRYTEFYGTSERSAVNLVHDALTKYRIWEEEIEKWQNPILKNEKLPEW
*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17587094-17589746(-) 17587078-17589020(-) 17588981-17589746(-)
Potential amino acid sequence	MKNFQNGEPDPDLKISCRQISPFIPHDYKDSSLPTSVFVYTLVNTGKDRAKVSLLMTWANSIGG FSHHSGGHFNEPFIAEDGVSGVLLHHKTAKDNPPVTFAIAACETQNVNVTVLPVFGLSGEGHDS AKQMWDRMKQNGHFDRENFEAGTSMPSSSGETLCAAVSASTWVEPHGRCTVVFGLAWSSPKIKF QKGCTYNRRYTEFYGTSERSAVNLVHDALTKYRIWEEEIEKWQNPILKNEKLPEW(-) MVNRIQTLKSHVVRYHHSFLMITKIAASQLLSLCTL(-) MTWANSIGGFSHHSGGHFNEPFIAEDGVSGVLLHHKTAKDNPPVTFAIAACETQNVNVTVLPVF GLSGEGHDSAKQMWDRMKQNGHFDRENFEAGTSMPSSSGETLCAAVSASTWVEPHGRCTVVFGL AWSSPKIKFQKGCTYNRRYTEFYGTSERSAVNLVHDALTKYRIWEEEIEKWQNPILKNEKLPEW *(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0473600_circ_g.3

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