Detail information of AT4G17140_circ_g.6


General Information
CircRNA Name AT4G17140_circ_g.6
ID in PlantcircBase ath_circ_031395
Alias NA
Organism Arabidpsis thaliana
Position chr4: 9625478-9627873  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT4G17140
Parent gene annotation Pleckstrin homology (PH) domain-containing protein
Parent gene strand -
Alternative splicing AT4G17140_circ_g.7 AT4G17140_circ_g.8 AT4G17140_circ_g.9 AT4G17140_circ_g.10 AT4G17140_circ_g.11 AT4G17140_circ_g.12 AT4G17140_circ_g.13
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G17140.3:8
AT4G17140.2:6
AT4G17140.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAGTTTCCACGTGAACTGCATTCAGCTCATTTTTGTCTCCAGCAAACCACTGAAAGGTATTG
TCCACAGTTATATGCACAATATCTAGCTTCAGGTAActgccataagcatccaactgagcatgca
aaagtttgttggagagtaatggagttttaactacgtcttttgatgtgttgtagaaggtaagttc
tgggccga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCCATAAGCATCCAACTGAGCATGCAAAAGTTTGTTGGAGAGTAATGGAGTTTTAACTACGT
CTTTTGATGTGTTGTAGAAGGTAAGTTCTGGGCCGATAGCCTGCAACAGTAGAAACGAGCTTCA
AACATTAAAGGGGAATTTTTCCTTGGCTTATTATGCACATACAAAGAAGAAAGTTGGCCACTAT
AAGAACCTGAAACTCAATGATCATTTCCGTGGACCTCTCTGTTGTGGTGCTGGGAGATTGAGAA
ACCGGATCTTCCTTCCTCTCAGAGTCTTGTTGTGGGGCTTTATGATATACTTCCAACTCAACCC
CATCCTCTCTAGAAACAGAATAGCTGCTGCATGCTCCCAAAGAGATACATGAATCCAAAACTTG
GCCATTCTGTGTCAATATGAAAAAAGTGAGACAAAATAAAAGGACAACAGAAATAAATTTAAGA
TCTAACACCGAGTAATAAAATTGAATATAGAATTTCTATACCTTAAAGACTACATTCCTGAATT
GCAACCTTTTCCCACTTCCTACATATATAATAGGCTCTATACTAGGTGAAGAGAGGATGCCTCC
ATTTCTATCTTTCAGGTATAAAGTTCCACCATTACCATCATAAACAAAGTTATCAAATTTTTCA
TCTTCAGCGATCAAAGGACCAAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG
ACTTATCCATGACAATTGCGTCGACCATATTAAGGTTTTTATCTTCTTCACTTGATAGCACACT
GCCTATAGTAGGGACAAAAAACTCTACTACGGCCAGTAGAAAATCCAAAGCTACAAGCAACTGT
GGCCTTTGAATAGAAACGGAAACAAAAGTTGACAACTGACCAAATTGCGCATCAAGAGTGAGCA
TCGAAGGAAAGGGTCCAATATCACTCCCCGTGGTTACATGTGACTGAGTTAAACCCTGATTTTT
ATCAGTCACAGAATGTGAATCTCCAAAATCTAAATCTGCAGGTCTTCCTACAGCCAGTCTGAAC
TCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTGAATCCCTTCAATGTTGCAGTAAGGAAAC
CCTCATCGTGTGTATTGGATTTGTAGAGAAGCCAGCCACCAGAGATCTATAAGCATATACGAAA
AAAATTGTTTAGATGTTAACTATGTGCCATGAGGTTGTTTCTGCTATGAAGTCCCTTTGATTTA
AAATCCCTAGGAAAAAATAGATCACGAGAACAGAAAATGGAGCCAAAGAAATAGAGAAGATGTA
GGGTCCCATAAGAACAATCACATGACTAATCCCAGGAACTAGAAAGGAATTTCACAAAAGACTG
ATTTGAATAAATCCATATCAATATAGCGGATCAACAATTTTGAAATCTTTTTGGGGAACCAGTT
CCAGAGTGAGGCAATTCCGCATGAAGTATCTATGCAAAGGGATCCTCTACCCTCGGCTTTCTTC
AAGAAAGAACTTAACAAATGCATATGCCCCCAACTTCTCGCTAGTTGGTATTACTTATATCCCT
CTTAAATGTATCAGCTGTGGCAGCTCCAAAGGACAAAATAATACTAAATACTCCTAGATAAATA
TGACAAATGAAATGAACATGGTACATGGAAGCGTACCTGTACAGCAGCCAACGGTGTATCTCTT
GCTGTCCCAGCATACAAACACAACTCCACCAGATTGATGACAACAGAAACCTTCATTGAAATCC
AAGTATCAGTTTTCTCTGTCTGAGCAGCATTAGTATCCTCAGAAGTAAGAGTTTCATGTAAGTT
TCTTGAAGATGTCACAACATCACCACTCAATGGTGGCACAGCATGTGGAAGCTCAGAAATATTA
GACTGTGCACACTCTGTCAAGATCTGGTATTCCCTATTTGAGAGGGCTGCTCTTAGTTCGTCTA
TCTGAAAAAGCAGATATTTCGAAAAAGCATGAGTAAGTAAGTATTAAGTTACAGACTGGATATA
AAACATACCTCAATAGAAACCTCAATGCTCGGTATCTGATGTAACAAGTCTCGCAGAGATCGGT
TAATGGTTACAGAAACCCCCTTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACC
AACATTAAGGTTGATATCCATGACCTAAGTTAATGTTTTTTGGGTCAAAGAACAAAAACATTTA
GGAGAGGGTCATAAGTTAAAAAAAAATGCACAAAAAAGTTGTAAAGATTAAAGCGATATCAACC
AGAATAAATCATGCTCCTCCTAACAGCCAAATAACGAGAGTCCTCACCATTATTTTCATAGTTT
CCACGTGAACTGCATTCAGCTCATTTTTGTCTCCAGCAAACCACTGAAAGGTATTGTCCACAGT
TATATGCACAATATCTAGCTTCAGGTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.136161686
Functional Information
Coding potential Y
Potential coding position 9627777-9625480(-)
Potential amino acid sequence MKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELRAALSNRE
YQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMKVSVVINL
VELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEFRLAVGRP
ADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQLLVALDF
LLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDEKFDNFVY
DGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACSSYSVSRE
DGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDVVKTPLLS
NKLLHAQLDAYGSYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIG
ESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELRAALSNREYQILTECAQSNISELPHAV
PPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMKVSVVINLVELCLYAGTARDTPLAAVQ
ISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEFRLAVGRPADLDFGDSHSVTDKNQGLT
QSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQLLVALDFLLAVVEFFVPTIGSVLSSE
EDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDEKFDNFVYDGNGGTLYLKDRNGGILSS
PSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQDSERK
EDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDVVKTPLLSNKLLHAQLDAYGSYLKLDI
VHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLR
DLLHQIPSIEVSIEIDELRAALSNREYQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLT
SEDTNAAQTEKTDTWISMKVSVVINLVELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLT
ATLKGFSVIDNREGTEKEFRLAVGRPADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTL
DAQFGQLSTFVSVSIQRPQLLVALDFLLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYK
QQTAEAFLSPLGPLIAEDEKFDNFVYDGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRN
VVFKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMI
IEFQAIGPELTFYNTSKDVVKTPLLSNKLLHAQLDAYGSYLKLDIVHITVDNTFQWFAGDKNEL
NAVHVETMKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELR
AALSNREYQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMK
VSVVINLVELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEF
RLAVGRPADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQ
LLVALDFLLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDE
KFDNFVYDGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACS
SYSVSREDGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDV
VKTPLLSNKLLHAQLDAYG(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017