Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G17140_circ_g.6 |
ID in PlantcircBase | ath_circ_031395 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr4: 9625478-9627873 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT4G17140 |
Parent gene annotation |
Pleckstrin homology (PH) domain-containing protein |
Parent gene strand | - |
Alternative splicing | AT4G17140_circ_g.7 AT4G17140_circ_g.8 AT4G17140_circ_g.9 AT4G17140_circ_g.10 AT4G17140_circ_g.11 AT4G17140_circ_g.12 AT4G17140_circ_g.13 |
Support reads | 3 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G17140.3:8 AT4G17140.2:6 AT4G17140.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.136161686 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9627777-9625480(-) |
Potential amino acid sequence |
MKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELRAALSNRE YQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMKVSVVINL VELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEFRLAVGRP ADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQLLVALDF LLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDEKFDNFVY DGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACSSYSVSRE DGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDVVKTPLLS NKLLHAQLDAYGSYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIG ESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELRAALSNREYQILTECAQSNISELPHAV PPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMKVSVVINLVELCLYAGTARDTPLAAVQ ISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEFRLAVGRPADLDFGDSHSVTDKNQGLT QSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQLLVALDFLLAVVEFFVPTIGSVLSSE EDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDEKFDNFVYDGNGGTLYLKDRNGGILSS PSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQDSERK EDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDVVKTPLLSNKLLHAQLDAYGSYLKLDI VHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLR DLLHQIPSIEVSIEIDELRAALSNREYQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLT SEDTNAAQTEKTDTWISMKVSVVINLVELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLT ATLKGFSVIDNREGTEKEFRLAVGRPADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTL DAQFGQLSTFVSVSIQRPQLLVALDFLLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYK QQTAEAFLSPLGPLIAEDEKFDNFVYDGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRN VVFKNGQVLDSCISLGACSSYSVSREDGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMI IEFQAIGPELTFYNTSKDVVKTPLLSNKLLHAQLDAYGSYLKLDIVHITVDNTFQWFAGDKNEL NAVHVETMKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEIDELR AALSNREYQILTECAQSNISELPHAVPPLSGDVVTSSRNLHETLTSEDTNAAQTEKTDTWISMK VSVVINLVELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLTATLKGFSVIDNREGTEKEF RLAVGRPADLDFGDSHSVTDKNQGLTQSHVTTGSDIGPFPSMLTLDAQFGQLSTFVSVSIQRPQ LLVALDFLLAVVEFFVPTIGSVLSSEEDKNLNMVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDE KFDNFVYDGNGGTLYLKDRNGGILSSPSIEPIIYVGSGKRLQFRNVVFKNGQVLDSCISLGACS SYSVSREDGVELEVYHKAPQQDSERKEDPVSQSPSTTTERSTEMIIEFQAIGPELTFYNTSKDV VKTPLLSNKLLHAQLDAYG(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |