Plant Circular RNA Database

Detail information of Os03g0652100_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os03g0652100_circ_g.6
					
						ID in PlantcircBase
						osa_circ_020841
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 25341667-25344584  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0652050						
					
						Parent gene annotation
						
							Hypothetical protein. (Os03t0652050-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0652100_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0652100-01:4
Os03t0652100-01:4
Os03t0652050-00:4

General Information
CircRNA Name	Os03g0652100_circ_g.6
ID in PlantcircBase	osa_circ_020841
Alias	NA
Organism	Oryza sativa
Position	chr3: 25341667-25344584 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0652050
Parent gene annotation	Hypothetical protein. (Os03t0652050-00)
Parent gene strand	-
Alternative splicing	Os03g0652100_circ_g.5
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0652100-01:4 Os03t0652100-01:4 Os03t0652050-00:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGA
TTTCCATGTCATAGATGACGGCACAGGATCAGGATGaatctgggcatacaaaaagtgaggaaca
acaacaaagttttgcagaagatgttagtgtggaatccgttgcaacagctggagcaaacaaacac
atgagtga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 712
Transcript exons: 25341667-25341791,25343801-25344070,25344152-25344286,25
344403-25344584
AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATC
CGTTGCAACAGCTGGAGCAAACAAACACATGAGTGAAGATGATACAAAGATTCCATTTTCGAAT
CCGTCAGCATCCATAACAGAAGGTACTCAACTATCTAGAGACCCTGATCTACCAGCTGGGCAGC
CTTTGCAACCTGGCATGTCATCATCTGGTGTTGGTGTTATCGGCCGGAGGAGTGTATCTGATCT
TGGTGCAATTGGTGATAACCTCAGTGTAGCTTCTGCAAGTACTAGTCATGATCTGCTTTATAAT
CTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAA
ATTATATTCCGAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGT
ATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTT
GCTTTCTACTATCAGCAAAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAAT
CGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCACAAGTTACAAC
TGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGA
TCAGGATG
						
					

						Genomic sequence
						
							AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATC
CGTTGCAACAGCTGGAGCAAACAAACACATGAGTGAAGATGATACAAAGATTCCATTTTCGGTA
TGATCCAACTTTTGCAAAGTTACTCAAGAATATCAGCTTCTAGGAACACTATAGTTTTCCATGC
AAACTTTCTATATTCCACAATTTTCATGTGATAAGATTCTACAGTTAAATTTATGATTTGTGTG
TGTGTGTGTGTTGGGGGGGGGGGGGGGGGTCGTTCTTTGTTTCAGATGCTACCAAGTTGCAATT
GGTTGGAATTCTGATTGTAGCTTCTAGGGGTTCTGGTTGGTTAATTTGGTCAGTTCAGCTTCTG
ACTAATAGAATTCTACTTTAGCTGATCAGAAAAGCGAGCTAATTTAAAAACCCAAATCCAGAAG
GTTAACGATAATTCCTGTATCCCAGTGTAAAATATTAGAAAAAACTTAAAAATATGTTCCCCCA
CTTGCCCATGTTAAAGCTTGAAGGTTAATGCTATAATAGCTTTGCACAAGCAAGTTAATAAATG
CCATAGAATGCTGGAACTGTAGAATAGGCAGAGTTGGATGCTGAAGTATGGACATGAACTTGGA
CGTGCTTTTCTGATTCTGAGCTTCATGTTGACAAGAAGATTTGCCACCCAAGCAATGTGAACCT
GGTAACCAGTGAAATAAGGTGGTTACATGAACAGAAGCGAAATTAATGTCTCACTATTGCTTGA
ATTCAAGCATACTGCAATCATCAGTGAAATAGTTACTTCTAGTTGCTTGGGAAATTCATTGATT
ATCCTAGTTGCTTGGGAAATTCGGAAACGCTGTAATGACTCTGCTTTCAAAGGAGTGAATCCAA
ACATCACAGAGGTGTTGCGGGCAGTGTCAACAGAAGCTAGGCTTTGGTGCCTGTCTGGACTCTG
GAGCCCTTGTGCTCCAAGTTTTACTTTGTAGGTTGCTAACCCAAGGGCACAGGCTGTCGTAGGG
TGTTTTTTTGGGTCATGTGTTGCCTTAGTTTTACCTTTGCTGTTTGTGGATGGGTTCTTGGTGA
GGGGTTTGTGAGCCCTTGGTTGTATAGGTGGTTCGTTTTCCTTAATGAAATGAAGCCCGGCTCT
TCTGCATTTTCTAAAAAAAAAGGTTACTCCTGTTTCAAATTACTTGGCATTCTAGCATATCTCA
CACTAACCAAGGAGCTGTGGCAAATTATATTGATACCCTCTTTAAATGCATGCCAATTGTTTTC
CCAAAGCAGTCATCTATACTCCTTTATAAGAAGGTAGTGGTGGCAGTGAATCTGCCACCCCACC
TACTCCCATTATAAATTTTACTCTTTTGCAAATTATCCCTTGGAACTTATTAATATAAAAAAAA
TCAAAATCTAAATGCTAGCCACATATAAAATCAAATGGATAGCCACATATTCCCTATAGCAAAA
AGATGGGTAACACATTTCATGGGAAATACACTTTTATTTATTTTAGGCAGTATATAATATTTTT
TATCCGTAGCAAAGCACTGGCATTCAGCTAGTTAACTCTAATTAGTTGAGATGAGCCAATAAGA
ACTGTGATTGCATTGATGTGTGACTGCATTGATGAAGGGTGGGGAGGGAAGTTCACCTCTAAAA
GTGCTTTGGAATGTGAGCATGACAAGTATTTTGGTACAAAAATTGATCCTAGAATGGCAAGTAA
TTTGAAATGGAGGGAGTGTGGACTAACTATTGGTGAAAAGTGTAAATCTATTTTTCTAATAGAG
GAAACCAATAGAGAATTTTTCAGTTTGAGGATTTCTGGCTTTTTGGGTGCGATTCAGATGTTGA
AAGAACAATGCTAACATATATGATTCATCAGAATTGCAGAACAAATATTGCATACTATAATGGC
ATTTACTTCATGGACTTCATGGTTCACTATCCTTATGTTTTTTCCCCTTGGCTGGGCTTTGTGG
TTCACTATCCCTGCTTCTACAATTTGTTTTGCCTAGGTGTCTGAACCGTTTAGGAGAGCAATGT
TTCAGATTAATGATGGAAGTATCGTAGTTTTTTCATTTTTTGCTTAACTCGTTATATTTGAACA
CCTACTGTTCTTGTTTTCTCAGAATCCGTCAGCATCCATAACAGAAGGTACTCAACTATCTAGA
GACCCTGATCTACCAGCTGGGCAGCCTTTGCAACCTGGCATGTCATCATCTGGTGTTGGTGTTA
TCGGCCGGAGGAGTGTATCTGATCTTGGTGCAATTGGTGATAACCTCAGTGTAGCTTCTGCAAG
TACTAGTCATGATCTGCTTTATAATCTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAA
CCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGGTAAGATCATTTTAGTAGAGTTGTTATG
AACAAAATATTCTGGCGTATTGTTCTAACTTCTTTGTCTTCTGTTATTTTCAGAAGCACCCTGC
AGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAA
AGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAGTAA
ATTTCCACACTTTTTTTTCAATTGTTTTCATCTGCCTTGCCTGCCTTTAGAAACTTCCAATGAG
TTATAAACTGTTTGCTCTTTCTCCTGGCATTTTCTGTTGCTTTCATAGAACACATACCAGCAAT
TTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTT
CCAACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTT
GATTTCCATGTCATAGATGACGGCACAGGATCAGGATG
						
					

			
		

Sequences
Splice junction sequence	AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGA TTTCCATGTCATAGATGACGGCACAGGATCAGGATGaatctgggcatacaaaaagtgaggaaca acaacaaagttttgcagaagatgttagtgtggaatccgttgcaacagctggagcaaacaaacac atgagtga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 712 Transcript exons: 25341667-25341791,25343801-25344070,25344152-25344286,25 344403-25344584 AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATC CGTTGCAACAGCTGGAGCAAACAAACACATGAGTGAAGATGATACAAAGATTCCATTTTCGAAT CCGTCAGCATCCATAACAGAAGGTACTCAACTATCTAGAGACCCTGATCTACCAGCTGGGCAGC CTTTGCAACCTGGCATGTCATCATCTGGTGTTGGTGTTATCGGCCGGAGGAGTGTATCTGATCT TGGTGCAATTGGTGATAACCTCAGTGTAGCTTCTGCAAGTACTAGTCATGATCTGCTTTATAAT CTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAA ATTATATTCCGAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGT ATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTT GCTTTCTACTATCAGCAAAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAAT CGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCACAAGTTACAAC TGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGA TCAGGATG
Genomic sequence	AATCTGGGCATACAAAAAGTGAGGAACAACAACAAAGTTTTGCAGAAGATGTTAGTGTGGAATC CGTTGCAACAGCTGGAGCAAACAAACACATGAGTGAAGATGATACAAAGATTCCATTTTCGGTA TGATCCAACTTTTGCAAAGTTACTCAAGAATATCAGCTTCTAGGAACACTATAGTTTTCCATGC AAACTTTCTATATTCCACAATTTTCATGTGATAAGATTCTACAGTTAAATTTATGATTTGTGTG TGTGTGTGTGTTGGGGGGGGGGGGGGGGGTCGTTCTTTGTTTCAGATGCTACCAAGTTGCAATT GGTTGGAATTCTGATTGTAGCTTCTAGGGGTTCTGGTTGGTTAATTTGGTCAGTTCAGCTTCTG ACTAATAGAATTCTACTTTAGCTGATCAGAAAAGCGAGCTAATTTAAAAACCCAAATCCAGAAG GTTAACGATAATTCCTGTATCCCAGTGTAAAATATTAGAAAAAACTTAAAAATATGTTCCCCCA CTTGCCCATGTTAAAGCTTGAAGGTTAATGCTATAATAGCTTTGCACAAGCAAGTTAATAAATG CCATAGAATGCTGGAACTGTAGAATAGGCAGAGTTGGATGCTGAAGTATGGACATGAACTTGGA CGTGCTTTTCTGATTCTGAGCTTCATGTTGACAAGAAGATTTGCCACCCAAGCAATGTGAACCT GGTAACCAGTGAAATAAGGTGGTTACATGAACAGAAGCGAAATTAATGTCTCACTATTGCTTGA ATTCAAGCATACTGCAATCATCAGTGAAATAGTTACTTCTAGTTGCTTGGGAAATTCATTGATT ATCCTAGTTGCTTGGGAAATTCGGAAACGCTGTAATGACTCTGCTTTCAAAGGAGTGAATCCAA ACATCACAGAGGTGTTGCGGGCAGTGTCAACAGAAGCTAGGCTTTGGTGCCTGTCTGGACTCTG GAGCCCTTGTGCTCCAAGTTTTACTTTGTAGGTTGCTAACCCAAGGGCACAGGCTGTCGTAGGG TGTTTTTTTGGGTCATGTGTTGCCTTAGTTTTACCTTTGCTGTTTGTGGATGGGTTCTTGGTGA GGGGTTTGTGAGCCCTTGGTTGTATAGGTGGTTCGTTTTCCTTAATGAAATGAAGCCCGGCTCT TCTGCATTTTCTAAAAAAAAAGGTTACTCCTGTTTCAAATTACTTGGCATTCTAGCATATCTCA CACTAACCAAGGAGCTGTGGCAAATTATATTGATACCCTCTTTAAATGCATGCCAATTGTTTTC CCAAAGCAGTCATCTATACTCCTTTATAAGAAGGTAGTGGTGGCAGTGAATCTGCCACCCCACC TACTCCCATTATAAATTTTACTCTTTTGCAAATTATCCCTTGGAACTTATTAATATAAAAAAAA TCAAAATCTAAATGCTAGCCACATATAAAATCAAATGGATAGCCACATATTCCCTATAGCAAAA AGATGGGTAACACATTTCATGGGAAATACACTTTTATTTATTTTAGGCAGTATATAATATTTTT TATCCGTAGCAAAGCACTGGCATTCAGCTAGTTAACTCTAATTAGTTGAGATGAGCCAATAAGA ACTGTGATTGCATTGATGTGTGACTGCATTGATGAAGGGTGGGGAGGGAAGTTCACCTCTAAAA GTGCTTTGGAATGTGAGCATGACAAGTATTTTGGTACAAAAATTGATCCTAGAATGGCAAGTAA TTTGAAATGGAGGGAGTGTGGACTAACTATTGGTGAAAAGTGTAAATCTATTTTTCTAATAGAG GAAACCAATAGAGAATTTTTCAGTTTGAGGATTTCTGGCTTTTTGGGTGCGATTCAGATGTTGA AAGAACAATGCTAACATATATGATTCATCAGAATTGCAGAACAAATATTGCATACTATAATGGC ATTTACTTCATGGACTTCATGGTTCACTATCCTTATGTTTTTTCCCCTTGGCTGGGCTTTGTGG TTCACTATCCCTGCTTCTACAATTTGTTTTGCCTAGGTGTCTGAACCGTTTAGGAGAGCAATGT TTCAGATTAATGATGGAAGTATCGTAGTTTTTTCATTTTTTGCTTAACTCGTTATATTTGAACA CCTACTGTTCTTGTTTTCTCAGAATCCGTCAGCATCCATAACAGAAGGTACTCAACTATCTAGA GACCCTGATCTACCAGCTGGGCAGCCTTTGCAACCTGGCATGTCATCATCTGGTGTTGGTGTTA TCGGCCGGAGGAGTGTATCTGATCTTGGTGCAATTGGTGATAACCTCAGTGTAGCTTCTGCAAG TACTAGTCATGATCTGCTTTATAATCTGCAAATGCTTGAAGCTGCTTTCCATAGGCTTCCACAA CCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGGTAAGATCATTTTAGTAGAGTTGTTATG AACAAAATATTCTGGCGTATTGTTCTAACTTCTTTGTCTTCTGTTATTTTCAGAAGCACCCTGC AGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAA AGAATGGGTGGCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAGTAA ATTTCCACACTTTTTTTTCAATTGTTTTCATCTGCCTTGCCTGCCTTTAGAAACTTCCAATGAG TTATAAACTGTTTGCTCTTTCTCCTGGCATTTTCTGTTGCTTTCATAGAACACATACCAGCAAT TTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTT CCAACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTT GATTTCCATGTCATAGATGACGGCACAGGATCAGGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.118235529

Conservation Information
Conserved circRNAs	NA
PMCS	0.118235529

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							25344564-25344582(+)
25344583-25341759(+)
25343819-25344579(-)
						
						Potential amino acid sequence
						
							MTAQDQDESGHTKSEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRD
PDLPAGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQP
KDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLS
ARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSG*(+)
MNLGIQKVRNNNKVLQKMLVWNPLQQLEQTNT*(+)
MDADGFENGIFVSSSLMCLFAPAVATDSTLTSSAKLCCCSSLFVCPDSS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	25344564-25344582(+) 25344583-25341759(+) 25343819-25344579(-)
Potential amino acid sequence	MTAQDQDESGHTKSEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRD PDLPAGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQP KDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLS ARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSG(+) MNLGIQKVRNNNKVLQKMLVWNPLQQLEQTNT(+) MDADGFENGIFVSSSLMCLFAPAVATDSTLTSSAKLCCCSSLFVCPDSS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0652100_circ_g.6

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