Detail information of BGIOSGA031464_circ_ag.1


General Information
CircRNA Name BGIOSGA031464_circ_ag.1
ID in PlantcircBase osi_circ_008664
Alias Chr10:23290730_23295608(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20436302-20441181  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031464_circ_ag.2 BGIOSGA031463_circ_igg.1 BGIOSGA031463_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGTGAGCTTGGGGTCTCTAAATTGCAGTTGCTGAAGTACTTCCCACTTATTCCAGTAACTTG
AGGATGTAATGCCACATAACATGTCGTTGCAGCACCcctgttctacagttttgtgtacgaatct
tccaatggacttcactagagctgcaagagagaaccaatgcacaagaacagttaagaaatattat
atttataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTCTACAGTTTTGTGTACGAATCTTCCAATGGACTTCACTAGAGCTGCAAGAGAGAACCA
ATGCACAAGAACAGTTAAGAAATATTATATTTATAAGCAGCATTGTTCGTTGTGTTTACCAGTA
ATCAAAATGGTTGGGGATCATCCTAAATTGGCATTATGGAGTATGTGCTTCTTCAAGTACTAAT
TGTTCCAAAATTCTAATTACACTCCAAAATTTTGTTCTGAATGGTTTGGGAATTACCATTTATA
ATAGTCCTGTGCCTGAACAGGTTGGTTGTAACAACACCAGGATGGACTGCATTAGCCGAAATGT
TCACACCATCTTCCTGTTCATACTCAACGGTTTCCCGGTTATTCTCCATTGATTTGACATATAA
TATATATGATCAGAGATTACATACGAAATTTAGGCATAAGCTACTACCTTCAGAACTCGTGACA
GCTCAGTTGAGTGCAAAATGTTGGCAAGCTTAGACTGGCCATAAGCAATAAGACTGATGAATCT
GGTAAGAAAAGTTAAGTGCTTAATATTATCTAATAAGTTGAGTGCATACTGCGTAATAAATATA
CTTATCTTTACTAATTGGAGCTCCCTTGATAAGGGGACCTTACGCTAATTTTTGGATGATAAAA
AGCCAAAAATTCTTATATTAAACAGTCAAAAATTTAACATTAATTCAAAGAAAAAGAATAGATC
ATCCAGTTCTCCCACAGACAGCAGGAAATCATCTCCTTGTGCACTACCCACTAATGTAAAATTG
GGTTGTTTTTGTTATTATCCATATGATATCTAGTATGTGTCATATACGAAAATGGGGTGTCCAG
TCCTAATTTTTAGAATCTCAGAATTAATTACCTTGAAGGCTCCTTCACCTTATCAAAACATATC
CCTTTAGGATAGGTCACAAAATGTGCTGAAGACGACACATTTACGATCCTTCCTTCAACACCAG
TTTCGCTACTTGTCCTCTTCATGTTCTCCAGCAAGAGATTTGTTAGAAGAAAGTGGCCTGTCAT
TCAAGTCAACAGTTAGTGCACTATGAGCATCCTCTCACAACCCAGAAAGTCTCAAGAATTAACC
AAATCACTCAAGCAGCTAATCCGTTAATAAGATTGAGATGCATGAAGAAATGCTGTGTAATTTC
TCGTACCGATGTGATTTGTTGCAAATTGCAATTCCAGGCCGTCAATGGAGCGTGTGCAGTTCCT
TGTCATGATTCCAGCATTATTACTGTTTATAACCACAATTAAAAATTTATTATTTAAGTTGACA
AAATAATAATACTCCATCCGGCTTTTAATAGATGATGGTGTTAAATTTTGACATGACATTTGAC
TTTGTTCATCTTATTGAAAAAATTTTAGTACAAATATAAAAAATATGAGTCAATCCTTAAAAGT
TATTTTAAAGTGTACAAAGTTTTTCACTTTTCTTGCTTCTAAGGATTGTTTTTTCTTCTGCTAT
ACTCAATGAAAAGACACAATCTAGTGTTGTTTTCCCTAAAAAAATTATTTTGATGGTAAAACAA
GTTATAACAAAATAAATGGTATTTTAAATAGATAAATAGTCAAGCGTCATGTCAAATGTAAACG
GCATCATCTGCTAAAACAAACGGAGGAGGGAGTACATATAGAAGAAGCGTTCAGATTCTTGCTC
TTACATGAGTATGTTGAGAGGTAGGTTCAGAGCCTCAAACTCGGTGGCAAATCTCCTCACCGAA
TCCATGGAGCTGAGGTCCATCTCCAGCACATGGATACCGGCGCCGGGGATCTCAGCCCGGATCG
CCTCGCTGGCCCTGTGCCCGGCGGCGACGTTGCGCACGGCCATGACGACGCGCACGCCGCGCAG
CGCCATGACGCGCGCCGTCTCCAGCCCGATGCCGCTCGACGCACCTGCAGCTCATCAGCCCACT
CTGAATTTTTCTGGCCAACGTCGAAACCGTGAGCTAAATGGCATGGCAGCAGACCAGCAGCAGC
ATCATATTCGTACCTGTGATCAGGGGCGGAGCTAGTATAGCTAAGGGGGTGCCCAGGAACTGGT
TAAAAAAAAATTACCTATAGTTTATCTATTTTCACCATATATATACCCCGTCAGTTTCACTCAT
ATCAAGCTAAATTTGATTCAAACCAGAGTAAAGCAAGCGAGTGGAACCTCTTTCATTTTGTTCT
AGCTCCGCCCCTGCCTGTGATAATAGAACTTCGCACCATCTTGCGCGAGTCGTTCAAAAAAAAA
ATCATATCCGTACCTGTGATGACGGCGACCAAGCCCCGAGCGTCGATGCCGGCGGTGACCTCCT
CGGCGGTGGAGGCGCCGGAGAAGCCGGAGGGGCCTTTGCGGTTGAACCAGCACATCGCCGACTC
CGTACCAAGCTGGCGTACGTCGAGCTCAGGGAATAGTGGCGTACTGGTGTTTGCAAGCTGAGTT
CAGCTTCGGCACCAGATGGCCTGAAATTATATGGTTAGACTCTGACAGTGAGAGAATGTGATGT
GGCCACAGCAGTTTCAGCTTGTTACTCTACCAAAGTACTAAAGATATTGTTTTTATACCATAAA
TTCCCAGAAGACTTCAATAAGATAAGAACACCTCACACAGCCGATGAGCAGAGCAGAGAAGTAA
AGCCGAGGTGGGGTGCTGGTTTTCTGTTCAGCTACAGCTCTGTGGGTGGCTGGGTGCAAAAGAA
TAATGCTCTCAGCATGCTACAGACGACAGTATGGAGGAAAAACTGCAGCCGATGGCGATGGAGA
TGCTGATATGCATTGACAAACTAGAAACCGCTTCCAAGTTACAACTGTAGCCGATGGCAATGGA
GATGCTGATATTGATTGTCAAATCACAAACCACTTCCAAGTTCCAGGTGTGCCAATGTCAACCG
GTGGACAAAGTATATCAAATTATCATTTTTTTTCTTCAAAGTCATATAGTAGTAGTATATATCT
GGTGTCCCATCATTTCTTGTGAGTAATCCAATTACTAGAATCCAAATCCAAAACGAAATACTAG
TACATTCTAGTATTGAGTAGATATAAGAGCTTACCGTTGACGAAGTGGAATTTCATTTCTGAAG
AAAACGGGTATACTAACTCAGAAGTATGTACTGGCTTCCAAAAGCATCACCCTTTATAACAATT
CTTCTTCTTCACTCTACATCCAATCATCTATTTGGTGATTTGAGTTGCCTAAACCTTTGAAACA
GCATTATAAATGACGTACCCATTTGTCTTAGGTCGCAAACTTTTTTTCTTACCAGAAGGGAAGC
AAAGCGCACTGGGGCATTGTATCGAACACCTGGCGGGCACGGACAGACAACACAACGGATCCGG
CGGGTCATACGCTCTGAAGCCGGAGCCCGGCGCAGCGGCGCGCCTCCTCCTCCGTCCGCCCGAT
CGCCTCGCCGTGGACGGTGCCGTGGACTTCCAAGTTCCAACGTCTCCTGCAAAGAGCCACCCAC
CCCACCAACAGGTTAACAGATGGTGGTCCTCGACGCGTCGAGGCTGAGTGATAGTACTATTTTC
TTCTCTCTTTTCGCCTGAGGAGTTCGCTGATCCTACGAACCCTCTCTTCCGTCGCGAGCACCCT
TCGTCGTTGCCATGGGCATCGCCGGGAAGGAGAGACCGGAGACGGTTCTGGTTGTGCTGCCGAA
CGGAGGAAAACGCCGAGACGTGTGCCTCGCCTTCTTCAAACGTCTCGCCCTCGTCTTTTCACTT
ATCCTTATCAATCAAAATTTAAATTTTCGACCTTAAATTAAGAGTTAATTTTAGAGGGTTTTTT
TTATCATAGTTTATTTTCTAGTCTTTAGATTTAGATCATTTAGAACACATATGTAAAAGTTTTA
TTTATAAATTATTTTTATTTACAAATATGATATTTGACTTATTTCAAACTATGGGGCTGCTCAT
CTGGTTGGGTCAAAATCTTGTTTGACCTCGGTATAACAGCCTCGTTGTCGGCCCATGAAGTGAC
CGGACTTCCTCCATCCAACCTAAAATATAAGGTATTTTGATAAGATGAGACATAGTACTATGAA
TCTGGACGGTGCTATATTCTAGTATTACGAATTTAAACACTAAGAGTGCGTTCGGTGGTAAGGG
ATGGGAACTAATCTCTCCCACATAAAAAAGGAGCGATTCATTAGCGCATGATTAATTAAGTATT
AGTTTTTTTTTGAAAAATGGATCAATGTGATTTTTTTAAACTGTTTTTTTAAACAACTTTCGTA
TAGAAATTTTTTTAAAAAAACACACTGCTTAACAGTTTGAATTTCCAAAAAAAACGCACCACTT
AACAGTTTGAAAAGCGGTCACGCGGGAAAAAAAAGTGGGTTCTCAACTAGTCTTGCCAAACGCA
GCCTAAAGTATGTTCCGTCCAATCAGATTATCAGAATACGTTATATTTTAGAACAGATGGAGTG
CGTGGTGAGGTGGGATGAATCTCCACACTAACTAGGCAATATACTCCCTCCATCACGGATACTC
GTCGGTTTTGACCCAGAGTAAATGATGTATAAGATATTATTGGTAAAATACAGTTTTTATGCGA
AGTTAGGCAACTCAAAGTCAAAACAGACTTCTTTTTTTAATGGAGTATAACAGAGAAGATTCTT
GGGAGGAACTACACTCTCTTTATTTGTAGACTTTCTATGAAAATTTTATGTTCGGCTTACACGA
AATAAAATGTAGCGCATGCATATATGAATAACTCAAACTACAGTTTGGCAGCCGACACAATGTT
GGAGCTAAATTCCCATAGTTTCTTGGCCAACTCTGCATTTGAAGCCTGTGAGCTTGGGGTCTCT
AAATTGCAGTTGCTGAAGTACTTCCCACTTATTCCAGTAACTTGAGGATGTAATGCCACATAAC
ATGTCGTTGCAGCACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021