Detail information of Os05g0594100_circ_g.4


General Information
CircRNA Name Os05g0594100_circ_g.4
ID in PlantcircBase osa_circ_042215
Alias NA
Organism Oryza sativa
Position chr5: 29585245-29585432  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0594100
Parent gene annotation Similar to GDA2 protein. (Os05t0594100-01);Similar to GDA2 prote
in. (Os05t0594100-02)
Parent gene strand -
Alternative splicing Os05g0594100_circ_g.1 Os05g0594100_circ_g.2 Os05g0594100_circ_g.3 Os05g0594100_circ_g.5 Os05g0594100_circ_g.6 Os05g0594100_circ_g.7 Os05g0594100_circ_g.8 Os05g0594100_circ_g.9 Os05g0594100_circ_g.10 Os05g0594100_circ_g.11 Os05g0594100_circ_g.12 Os05g0594100_circ_g.13
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0594100-02:1
Os05t0594100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGGGTGGAGTAGTTGTAGAGGAAGAGCGGGAGGCCGGGCCTGATGGCCCTCACCGAGTCCCT
GTACCTGGATGGCAGGCCGAACAGCTGCCTctggactcgccgccggggcacttgctgtcctccc
aagcgccgggatcgatgttggatccgccgaagctggtggcctcgaagatgccgtgaagct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 188
Transcript exons: 29585245-29585432
CTGGACTCGCCGCCGGGGCACTTGCTGTCCTCCCAAGCGCCGGGATCGATGTTGGATCCGCCGA
AGCTGGTGGCCTCGAAGATGCCGTGAAGCTGGTGGGTGGAGTAGTTGTAGAGGAAGAGCGGGAG
GCCGGGCCTGATGGCCCTCACCGAGTCCCTGTACCTGGATGGCAGGCCGAACAGCTGCCT

Genomic sequence CTGGACTCGCCGCCGGGGCACTTGCTGTCCTCCCAAGCGCCGGGATCGATGTTGGATCCGCCGA
AGCTGGTGGCCTCGAAGATGCCGTGAAGCTGGTGGGTGGAGTAGTTGTAGAGGAAGAGCGGGAG
GCCGGGCCTGATGGCCCTCACCGAGTCCCTGTACCTGGATGGCAGGCCGAACAGCTGCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.281028147
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study