Detail information of Os08g0139700_circ_g.2


General Information
CircRNA Name Os08g0139700_circ_g.2
ID in PlantcircBase osa_circ_035794
Alias NA
Organism Oryza sativa
Position chr8: 2211156-2212849  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0139700
Parent gene annotation Similar to terpene synthase 6. (Os08t0139700-01)
Parent gene strand -
Alternative splicing Os08g0139700_circ_g.1 Os08g0139700_circ_g.3 Os08g0139700_circ_g.4 Os08g0139700_circ_g.5 Os08g0139700_circ_g.6 Os08g0139700_circ_g.7 Os08g0139700_circ_g.8 Os08g0139700_circ_g.9 Os08g0139700_circ_g.10 Os08g0139700_circ_g.11 Os08g0139700_circ_g.12 Os08g0139700_circ_g.13 Os08g0139700_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0139700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATGGGCAGCATTGTACAAGCTCAGCATGCTTCTTGTGCCGTTATTGTTATCATCGCGTGTGA
AATTTCCTTCCTCGTCCCTGAACCTCTGGAACACATctcatgtgaagctatgtcattgagtaat
cggccaacgatgcaggaagatgtgatgatcttggggtaggccatgccccagttgatagcatcat
cggttgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 393
Transcript exons: 2211156-2211264,2212466-2212547,2212563-2212651,2212737-
2212849
CTCATGTGAAGCTATGTCATTGAGTAATCGGCCAACGATGCAGGAAGATGTGATGATCTTGGGG
TAGGCCATGCCCCAGTTGATAGCATCATCGGTTGTGACATCGTTTGAACATACATGGTGAGGAT
ATTGAGCTCCTCGCAATACAGAGATTGCAAAATCCCAAAGTCGAGCTTGGCGAACTCCAAAATG
GGCAACTTGTCGTAAACTGAGATGTAGTGCCTTGCTTCAACTCTTCTTGGCCTCCTGAAAAGAG
GGGTCCTAAGTGCACTGCACACCTCCCATGAATCCTGAGATGGGCAGCATTGTACAAGCTCAGC
ATGCTTCTTGTGCCGTTATTGTTATCATCGCGTGTGAAATTTCCTTCCTCGTCCCTGAACCTCT
GGAACACAT

Transcript length: 670
Transcript exons: 2211156-2211226,2211234-2211334,2211822-2211922,2211949-
2212002,2212466-2212675,2212715-2212815,2212818-2212849
CTCATGTGAAGCTATGTCATTGAGTAATCGGCCAACGATGCAGGAAGATGTGATGATCTTGGGG
TAGGCCAGTTGATAGCATCATCGGTTGTGACATCGTTTCCCATGGCGACGAAGGCGTAGACAGG
GACGTGCATGCAGCAGCTGCTTGGCACTGAAATCTTGAGGTGCTTGCTGTAGTTGTCGTAGATG
TCATCGAAAATCGAGACAAAGATGAACAATTTAGTGAGCATGGTTCTCCCATATGAGTACTGAG
GCTCGAAGAGAACTCCACCTATCTCGCGCAAAGCTTAGATGATCCTGGAGTTGGAGCTCTTTCC
ACCACCTGAACATACATGGTGAGGATATTGAGCTCCTCGCAATACAGAGATTGCAAAATCCCAA
AGTCGAGCTTGGCGAACTCCAAAATGGTCTCATTTCGTGTGGGCAACTTGTCGTAAACTGAGAT
GTAGTGCCTTGCTTCAACTCTTCTTGGCCTCCTGAAAAGAGGGGTCCTAAGTGCACTGCACACC
TCGTCCGCCATTGGCGACTGCAGATTAGCATCGTCGAGTATCTCCTCCCCATGAATCCTGAGAT
GGGCAGCATTGTACAAGCTCAGCATGCTTCTTGTGCCGTTATTGTTATCATCGCGTGTGAAATC
CTTCCTCGTCCCTGAACCTCTGGAACACAT

Transcript length: 992
Transcript exons: 2211156-2211416,2211505-2211640,2211782-2212000,2212474-
2212849
CTCATGTGAAGCTATGTCATTGAGTAATCGGCCAACGATGCAGGAAGATGTGATGATCTTGGGG
TAGGCCATGCCCCAGTTGATAGCATCATCGGTTGTGACATCGTTTCCCATGGCGACGAAGGCGT
AGACAGGGACGTGCATGCAGCAGCTGCTTGGCACTGAAATCTTGAGGTGCTCCTCCACCGTAGC
AGCTACCTGATCTGCACCTTCAGAGCGCCATTTCACCTCGTTGTAAAAGCATCTCGTAGCGTCG
ATTAATAGGTTTTTGACATAGTCGACATGCTTGTTCCCTTGGAGTTTAAGATCAGTTTCTATGG
ATTTCATGGTGGTCAGTACTTTCTTGTAGAAGAACTTCATGTAGCCTGGAAGTTCTTCAGCGGC
TTCCTCATCCCATCTTTCAATTGCTTCTGTGAACAGCTTGCTTTCTTCCAAGGTGCTGTAGTTG
TCGTAGATGTCATCGAAAATCGAGACAAAGATGAACAATTTAGTGAGCATGGTTCTCCCATATG
AGTACTGAGGCTCGAAGAGAACTCCAAGCATCCAAAAGTGCATCTCCACCATCCTATCTCGCGC
AAAGCTTAGATGATCCTGGAGTTGGAGCTCTTTCCACCACATGGTGAGGATATTGAGCTCCTCG
CAATACAGAGATTGCAAAATCCCAAAGTCGAGCTTGGCGAACTCCAAAATGGTCTCATTTCGTG
TGGGCAACTTGTCGTAAACTGAGATGTAGTGCCTTGCTTCAACTCTTCTTGGCCTCCTGAAAAG
AGGGGTCCTAAGTGCACTGCACACCTCGTCCGCCATTGGCGACTGCAGATGTTTTACCACAGAC
TGCAAATAGTTCCTAGTGAAGACGATAGCATCGTCGAGTATCTCCTCCCCATGAATCCTGAGAT
GGGCAGCATTGTACAAGCTCAGCATGCTTCTTGTGCCGTTATTGTTATCATCGCGTGTGAAATT
TCCTTCCTCGTCCCTGAACCTCTGGAACACAT

Genomic sequence CTCATGTGAAGCTATGTCATTGAGTAATCGGCCAACGATGCAGGAAGATGTGATGATCTTGGGG
TAGGCCATGCCCCAGTTGATAGCATCATCGGTTGTGACATCGTTTCCCATGGCGACGAAGGCGT
AGACAGGGACGTGCATGCAGCAGCTGCTTGGCACTGAAATCTTGAGGTGCTCCTCCACCGTAGC
AGCTACCTGATCTGCACCTTCAGAGCGCCATTTCACCTCGTTGTAAAAGCATCTCGTAGCGTCG
ATTAACTGCAAGATTAACCAAGCAGTTAAAGTTGTGATCAATGAGATCAGCTGCCTGCCTGCCT
GCAGGTAGTTGATGAGACTAGCTACTTACTAGGTTTTTGACATAGTCGACATGCTTGTTCCCTT
GGAGTTTAAGATCAGTTTCTATGGATTTCATGGTGGTCAGTACTTTCTTGTAGAAGAACTTCAT
GTAGCCTGGAAGTTCTTCAGCGGCTTCCTCATCCCATCTATTATATTTTTATGGTTCAATCATT
GATAAAAATTAAATTCAAGTTAAAGACAAGAATTTTGGCTCCATGCAGCTTCTTTGAAACAAAT
TAAGTTCGGAATGAATTTCATTATTAAAAGAAGAAACTTAATCAATTGACCTTTCAATTGCTTC
TGTGAACAGCTTGCTTTCTTCCAAGGTGCTGTAGTTGTCGTAGATGTCATCGAAAATCGAGACA
AAGATGAACAATTTAGTGAGCATGGTTCTCCCATATGAGTACTGAGGCTCGAAGAGAACTCCAA
GCATCCAAAAGTGCATCTCCACCATCCTATCTCGCGCAAAGCTTAGATGATCCTGGAGTTGGAG
CTCTTTCCACCACCTTCACCACACCGAAATAATAAATAAAAATTCACATTCTAGGTCCAGTTCT
TGTATGTACATGCATTAAATTGGACATCTATATAGATATATAGGTGAATTTTGGTAACTCCCAA
TACCTTGGCAAGGACAGTAAAATTGAGCCTATGCATGTTTTGAATTTTAGGGTTGGTTCAGGTA
TTATAGCTAGCACGAAAAGATAATAAGGTATTCTCTTGTGGTGTAGATGAAGATGAAGATTAAG
TGTTTTACGTAAAATAAGATGGTATTAATGTATAATTAATTGAGTTTTAATTATTATAAATTTT
AAAAATAGATTTATCTGATATTTTAGAACAACTTCCATATAGAAAGTTTTCGCACGAAACATAT
TGTTTAGTAGTTTGAAAAGCATGTCACCAAGATGATAATTTTCATCCAATTCCTATAGCAGAAA
CGATAATTGGACCTAATCTAGTGATTTTTAGAACATACATGGTGAGGATATTGAGCTCCTCGCA
ATACAGAGATTGCAAAATCCCAAAGTCGAGCTTGGCGAACTCCAAAATGGTCTCATTTCGTGTG
GGCAACTTGTCGTAAACTGAGATGTAGTGCCTTGCTTCAACTCTTCTTGGCCTCCTGAAAAGAG
GGGTCCTAAGTGCACTGCACACCTCGTCCGCCATTGGCGACTGCAGATGTTTTACCACAGACTG
CAAATAGTTCCTAGTGAAGACGATAGCATCGTCGAGTATCTCCTCCCCATGAATCCTGAGATGG
GCAGCATTGTACAAGCTCAGCATGCTTCTTGTGCCGTTATTGTTATCATCGCGTGTGAAATTTC
CTTCCTCGTCCCTGAACCTCTGGAACACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.33374223
Functional Information
Coding potential Y
Potential coding position 2212675-2211219(+)
2212778-2211175(+)
2212780-2212774(-)
Potential amino acid sequence MFYHRLQIVPSEDDSIVEYLLPMNPEMGSIVQAQHASCAVIVIIACEISFLVPEPLEHISCEAM
SLSNRPTMQEDVMILG*(+)
MLLVPLLLSSRVKFPSSSLNLWNTSHVKLCH*(+)
MLSLYNAAHLRIHGEEILDDAIVFTRNYLQSVVKHLQSPMADEVCSALRTPLFRRPRRVEARHY
ISVYDKLPTRNETILEFAKLDFGILQSLYCEELNILTMWWKELQLQDHLSFARDRMVEMHFWML
GVLFEPQYSYGRTMLTKLFIFVSIFDDIYDNYSTLEESKLFTEAIERWDEEAAEELPGYMKFFY
KKVLTTMKSIETDLKLQGNKHVDYVKNLLIDATRCFYNEVKWRSEGADQVAATVEEHLKISVPS
SCCMHVPVYAFVAMGNDVTTDDAINWGMAYPKIITSSCIVGRLLNDIASHEMCSRGSGTRKEIS
HAMITITAQEAC*(-)
Sponge-miRNAs osa-miR530-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017