Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08840_circ_g.7 |
ID in PlantcircBase | ath_circ_001478 |
Alias | AtciR30, AtciR30 |
Organism | Arabidpsis thaliana |
Position | chr1: 2838034-2838692 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | AT1G08840 |
Parent gene annotation |
DNA replication helicase, putative |
Parent gene strand | - |
Alternative splicing | AT1G08840_circ_g.5 AT1G08840_circ_g.6 AT1G08840_circ_g.8 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G08840.1:2 AT1G08840.5:1 AT1G08840.3:2 AT1G08840.2:1 AT1G08840.4:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.307231335 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2838371-2838689(-) |
Potential amino acid sequence |
MPPRKKPKSSALKSNKQSSANHSSQPSTFGIQQLFLRHIQNSQSTSNSHTSTADPVDQQNVNGL ASDTAVLTPQNPLGTSNEKPDESKDMDQQLTEASPKISKNLKRFSPGMR* |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Zhang et al., 2019 |