Detail information of Os11g0543800_circ_ig.2


General Information
CircRNA Name Os11g0543800_circ_ig.2
ID in PlantcircBase osa_circ_009529
Alias NA
Organism Oryza sativa
Position chr11: 19974523-19975899  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAGGCTAAGCACCTGTAGAGACCATGGACAGCAAGGTTCAATGCTTCTGTGTAAGCAGCTGG
ATTTTGACGCAGAGATTGATCTCTGTCTATGTCAATctgttcttaagaagcagtcatgcctttg
aaacagtaagaaatttgttgataagcattccagaactttaggtaacaaaatctggaagtgttgt
cctgtaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCTTAAGAAGCAGTCATGCCTTTGAAACAGTAAGAAATTTGTTGATAAGCATTCCAGAAC
TTTAGGTAACAAAATCTGGAAGTGTTGTCCTGTAAAATGCAATTGCTTGATCAGCACAACGATC
TAATGCTATTAGTCTTGAAATTTTGCATTGCAGGTATCATTTAACTTACCACAAGAATGTATGG
CTGAAGAAAGAGAACGACATGCAGCTGCAGATAAACTAACATTCTCCATATGAGATGATCGGGA
AAGTCTTTCAAGAAGTGGCCAGAATATACCAAGAAGAACCAAAACCGTGTCATCATCAATCAGA
CTAGATGTAATTGATGTCGCCAAATGGCCAAATAGAGCACCCATCCTGAAAAAGGAAACTTCAT
TTTCATTTGCTTACATTGTAGATCACAGCATGTTTCTAATTTTCTTCCACGGCATCCAAAAATC
CCTCCCAAAATACAATATCCTTAAAAATAGGTTCAAAATGACTGGTTGTTACTTGTGTTCTTTT
ATCTGTCAAATTCTATGATCCGGTCAAAGCATATCATATTGTTTTTTCTATAGCTTGCCATAAA
TGATCTAAGTGGGAGGATGTAAAAGTATCCACCTTTCCAAGAACCAAATAACTCCCAACTAAAT
GGTAAAGCCATCTTTTTATTAAAGATCACATCAACATCAACCAACAGGAGATGCTTCTCCACTT
GCTTTGCTCTCCTTTTGTTAATCTAGAACAAAGTGGTTTCATGTTTACAGTCAATTTTTCTTCC
GCGCAGCTGACTCTAGATAGCATTTATTCATCTCTATTGGCTAGAATGTAGTTGGTGATACTGC
ACAGCTTTCACTGGATAGTTCAAAAAGTAATATGATTGGATACTTATACATCAATTGAATATAT
TTATGCTGGCATGTTCTTTTGATGATCGCCCCAAAAGCAAATACTCGCTTTCTGCACAACTTTG
TACTTCAAGTTGTAGTTATTAGTTAAGTTATACTTCAATTAAATATCATTCAACATGAGGCTTT
GCATAGTTTATGACTTTGAATAGTCTATAATATGTTGACACAACGGAAAATTGCACCAATATTA
ATCAAATTTATATTATTTACAGTACAAAAAACTATTTTTCTTCAAACTGCTAACTTTAGTACCA
TTTCGTTAACATGCTTGATTCTTGAATTAGTCAAGTGTAGTAGTATCATTGAAAAGTGTGGAAG
ATACAAAAATATATATATTGCTAGAAAAAATGGGGCCACAAAATGTAAGAATGAAAGAACTTAA
AGGCTAAGCACCTGTAGAGACCATGGACAGCAAGGTTCAATGCTTCTGTGTAAGCAGCTGGATT
TTGACGCAGAGATTGATCTCTGTCTATGTCAAT
Conservation Information
Conserved circRNAs osi_circ_009088
PMCS 0.142763683
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017