Detail information of AT1G76850_circ_g.5


General Information
CircRNA Name AT1G76850_circ_g.5
ID in PlantcircBase ath_circ_010542
Alias NA
Organism Arabidpsis thaliana
Position chr1: 28850340-28853621  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G76850
Parent gene annotation Exocyst complex component SEC5A
Parent gene strand +
Alternative splicing AT1G76850_circ_g.2 AT1G76850_circ_g.3 AT1G76850_circ_g.4 AT1G76850_circ_g.6 AT1G76850_circ_g.7 AT1G76850_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G76850.1:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAAGGTCTAATCGACACTTTTCTGAGTGTTGTGGAAGAAAACAGATCAAGTGACCTAAGATCA
ATTGATGCAAATGGTTTCTGCCAACTGATGTTTGAGctggaaaacactgtgaggcttttgctgg
agctggaacccgaatctgatcctgtgtggcattatctaaatgttcaggtcggtatattcgaaga
tgtcactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAAAACACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAATCTGATCCTGTGTGGCATTATC
TAAATGTTCAGGTCGGTATATTCGAAGATGTCACTCTTTTACTACTTCTTACTATGTTCTGTGT
GGAATCTGGATTCCTAATAGATTTGCTTTGAGTATCAGAGTGACTTTTAGCTTATAAAATCTTT
CATTTGTTTCAACTTAGCACATTTATATGTCTCCTACACTTTTTGTTGCAATCCTCGTGTATTT
TCATAATTGGCTCTTTAATTACAGAATCATAGAATCCACGGCTTGCTTGAGAAATGTACATATG
ATCATGAAGCAAGGGTGGAAATTTTGCGTAACGACACTCATGAGAAAGCCATCTCAGATGCAAA
GTGGCAACAAATTCAACAAAATGGCGTTTCATATGTGAGTCTAGCATTGAGAATGATATATCAT
TAAAAGACTATTCAATATTCAGTTCTTTAGATGATAACGTGCCTTGTTTTTTCATCCTCTAGTC
AGATACCGCCTCTTCTAATGAAAATAATGCAGTTCAAGTTGACCTACAATCAGTGGAATTCCCC
AGCGAAGAGATTGATATTTTGAAGGGAAGATACATCAAAAGATTGACTGCTGTGCTTGTGCATC
ATATCCCTGTGTTTTGGAAAACAGCTATATCTATTTTCAGTGGAAAATTTGCCAAGGTATCCGC
TATTCTTTCTGCTTAGATCCCTATACTGACCCAAGAGTAGATTAATTCTGTAGTTATTATTTCT
TTCTTGAATTGGAAATAGTTCTTCATTTGATTTGAATTTAACTTTGATTTGCTTAGTCCTCCCA
AGTTACTGATACTTCAGCCAATAAAGCTGAGGAGAAGGTCACAGAGGCAAGATATTCAACTCAT
TCTTTGGAAGAAGTTGCTGGGATGATACGCAAGACTATTTCTGTCTATGAAGCAAAGGTATTAT
CTTTGTTTTCTAATTAAGTGACCTCTTCATTGGAACTTTTCTTCACATTAGAAGGACAATCCTG
TGGTATCTGTGCTATAAAGTGGCTCTAAATATTTTCTTCTCCTGATTACTGCTGTTGTAGGTGA
ACAGCACATTTTGTGATTTTGATGAATCATGCATTCTCCGCCCATTTATGAGTGATGCCATTAA
CGAAGTATCAAAAGCATGCCAAGCTTTTGAAGCCAAAGAGTCAACGCCCCACAGTGCTGGTATT
TGAACTTCTTCTGAAGCTTGAGCTTGCTGTTTAATTTAAGTAGACTAAGATGCTGTATAACCTT
TTTGGTTATGGCAGTCGTTGCACTGAGAAAAATCCAGGCGGAAATCACTAAGATTTATATCCAA
AGGCTTTGCTCTTGGATGAGGGCCTCCACGGAAGGAATATCAAAAGAGGAGACGTGGATCCCGG
TTTCTATTCTTGAAAGGAATAGATCTCCATATGCCATCTCTTACTTGCCTCTTGCATTCCGTTC
AGTTATTGTCTCTGGCATGGAACAAGTCAATCTGTAAGTTTCAACCGTATTTTGGTAACATATA
GAAAATATTTACATTGTGAGGTTTACTACACTGTGGAAGTGAAAAACCCCAGTTTTTTCTATTT
GTTGTATTTGGAGTTCCAGACGTCTATGTTTCCAGTACATACATCAAGGTCTAGTCTTTTCTGT
ATACATTAGAAAAAACAAAATGCCAATAGTCAGTAATTGTGATTCTAGCTTGTCATACCGTGAT
TACCAATTCTATGCTGAGACATGTAAAATCAAATGACTGTACCATGTTTGTATGATAGGAAAGG
GGTCTTATATGCTTCTCATTGCTATTCAGGAAACTGCATATACAAATGTGTACTTTTTTCATAC
CACAGTGTTTACTTTGTTAACCTGTTGATTTCCGTGTATACCTTTTTCAGGATGATTCTGTCTG
TCAAAAGTGAAGCTGCCAAATCAGAAGATATGTTTGCCCAAATTGAAGAAATCATAATATCCGT
TAGACTGGCATTTTTGAACTGCTTTCTGGATTTTGCTGGTACGAATTTTAACCAAGCATCCTTG
ATAATATCCTCATGCAAACACCGGAATGCAGGCAAATGCACACTTTAAAGTGGTTACGTTGATA
TGCTAATTTGCTTTCACCATATGCCAGCGCACTTGGAGCAAATTGGTGCTGATCTTTCCCAAAG
CACCTCCAGACAAGATAATTGGAAAAACGGATATTCTGATGAGCATCAGGAAGAACCATCAGCC
AACACCTACGGAAGTGTAATTGATCCTCACAGGCGGTTGTTGATGGTCTTAAGTAATATAGGTT
ACTGCAAAGATGAACTTGCTTCAGAGCTTTACAACAAGTTCAAATATACATGGTTACAGTCTAG
GTTAGTCCCTGCTTAATAAACGTCATTAGTGCTCTTCTGAACATCGTCTTTACTAAGTGGTAAA
CAAGTTGGGCATACTCGTGCATACTTAAATGAGTCAAACTGGATAATAGGTATTAACGGTTAAA
TTTGATGTGATTCATAATCAAATACTGTTCTCATGGGTGGATTTTGTATATGGTGTTATAGCTC
ACTAAACTAAGATTTTTGTGTTTTCACTTATTCAGAGACAAAAATGAAGACAGTAGTGATCTTC
AAGATCTAATAATGTCTTTCTCTGGACTCGGAGAGAAGGTCCTCGAGCATTACACTTTTGCTAA
GGTATTAATTTTTTTCCAGCCATATTAGCCTATGTATGCTTTTGCTAAGTGTTATAAATAGAAC
TTTAAATTTCCGAGAATTTCACCTGTTCAGGCAAATTTGATCAGAACAGCGGCCACAAATTATT
TGCTGGACTCTGGTATTCAATGGGGATCAGCACCTCAAGTGAAAGTAAGAAATCTATGCGAAAC
GATATCTATTAGCTTCTTGATTTGAATGAAGAAAAGAATTACTTAAATATTTACTCCAATCTTC
CAGGGCATACGAGATGCTGCTGTTGAGCTGTTGCACACTCTTGTAGCTGTCCATGCAGAGGTAT
ACTCATGAAAAAAAATTATTGGTCGTTTTGTGGTTCTTTAGACATTTTGACATTAAAATGTGTT
CCTCGACAGTGTTCATAGTGTAAAATCCTAATAACTTTGCACCGGAAAATAAAACTGCAGGTCT
TTGCTGGTGCTAAACCCCTCCTGGACAAGATTCTTGGCGTGCTGATCGAAGGTCTAATCGACAC
TTTTCTGAGTGTTGTGGAAGAAAACAGATCAAGTGACCTAAGATCAATTGATGCAAATGGTTTC
TGCCAACTGATGTTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.125720051
Functional Information
Coding potential Y
Potential coding position 28851257-28853618(+)
Potential amino acid sequence MIRKTISVYEAKVNSTFCDFDESCILRPFMSDAINEVSKACQAFEAKESTPHSAVVALRKIQAE
ITKIYIQRLCSWMRASTEGISKEETWIPVSILERNRSPYAISYLPLAFRSVIVSGMEQVNLMIL
SVKSEAAKSEDMFAQIEEIIISVRLAFLNCFLDFAAHLEQIGADLSQSTSRQDNWKNGYSDEHQ
EEPSANTYGSVIDPHRRLLMVLSNIGYCKDELASELYNKFKYTWLQSRDKNEDSSDLQDLIMSF
SGLGEKVLEHYTFAKANLIRTAATNYLLDSGIQWGSAPQVKGIRDAAVELLHTLVAVHAEVFAG
AKPLLDKILGVLIEGLIDTFLSVVEENRSSDLRSIDANGFCQLMFELENTVRLLLELEPESDPV
WHYLNVQNHRIHGLLEKCTYDHEARVEILRNDTHEKAISDAKWQQIQQNGVSYSDTASSNENNA
VQVDLQSVEFPSEEIDILKGRYIKRLTAVLVHHIPVFWKTAISIFSGKFAKSSQVTDTSANKAE
EKVTEARYSTHSLEEVAGMIRKTISVYEAKVNSTFCDFDESCILRPFMSDAINEVSKACQAFEA
KESTPHSAVVALRKIQAEITKIYIQRLCSWMRASTEGISKEETWIPVSILERNRSPYAISYLPL
AFRSVIVSGMEQVNLMILSVKSEAAKSEDMFAQIEEIIISVRLAFLNCFLDFAAHLEQIGADLS
QSTSRQDNWKNGYSDEHQEEPSANTYGSVIDPHRRLLMVLSNIGYCKDELASELYNKFKYTWLQ
SRDKNEDSSDLQDLIMSFSGLGEKVLEHYTFAKANLIRTAATNYLLDSGIQWGSAPQVKGIRDA
AVELLHTLVAVHAEVFAGAKPLLDKILGVLIEGLIDTFLSVVEENRSSDLRSIDANGFCQLMFE
LENTVRLLLELEPESDPVWHYLNVQNHRIHGLLEKCTYDHEARVEILRNDTHEKAISDAKWQQI
QQNGVSYSDTASSNENNAVQVDLQSVEFPSEEIDILKGRYIKRLTAVLVHHIPVFWKTAISIFS
GKFAKSSQVTDTSANKAEEKVTEARYSTHSLEEVAGMIRKTISVYEAKVNSTFCDFDESCILRP
FMSDAINEVSKACQAFEAKESTPHSAVVALRKIQAEITKIYIQRLCSWMRASTEGISKEETWIP
VSILERNRSPYAISYLPLAFRSVIVSGMEQVNLMILSVKSEAAKSEDMFAQIEEIIISVRLAFL
NCFLDFAAHLEQIGADLSQSTSRQDNWKNGYSDEHQEEPSANTYGSVIDPHRRLLMVLSNIGYC
KDELASELYNKFKYTWLQSRDKNEDSSDLQDLIMSFSGLGEKVLEHYTFAKANLIRTAATNYLL
DSGIQWGSAPQVKGIRDAAVELLHTLVAVHAEVFAGAKPLLDKILGVLIEGLIDTFLSVVEENR
SSDLRSIDANGFCQLMFELENTVRLLLELEPESDPVWHYLNVQNHRIHGLLEKCTYDHEARVEI
LRNDTHEKAISDAKWQQIQQNGVSYSDTASSNENNAVQVDLQSVEFPSEEIDILKGRYIKRLTA
VLVHHIPVFWKTAISIFSGKFAKSSQVTDTSANKAEEKVTEARYSTHSLEEVAGMIRKTISVYE
AKVNSTFCDFDESCILRPFMSDAINEVSKACQAFEAKESTPHSAVVALRKIQAEITKIYIQRLC
SWMRASTEGISKEETWIPVSILERNRSPYAISYLPLAFRSVIVSGMEQVNLMILSVKSEAAKSE
DMFAQIEEIIISVRLAFLNCFLDFAAHLEQIGADLSQSTSRQDNWKNGYSDEHQEEPSANTYGS
VIDPHRRLLMVLSNIGYCKDELASELYNKFKYTWLQSRDKNEDSSDLQDLIMSFSGLGEKVLEH
YTFAKANLIRTAATNYLLDSGIQWGSAPQVKGIRDAAVELLHTLVAVHAEVFAGAKPLLDKILG
VLIEGLIDTFLSVVEENRSSDLRSIDANGFCQLMFE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017