Detail information of AT2G03070_circ_g.2


General Information
CircRNA Name AT2G03070_circ_g.2
ID in PlantcircBase ath_circ_012632
Alias 2:906659-906842
Organism Arabidpsis thaliana
Position chr2: 906659-906842  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03070
Parent gene annotation Mediator of RNA polymerase II transcription subunit 8
Parent gene strand +
Alternative splicing AT2G03070_circ_g.3
Support reads 1/1/1/2
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03070.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGTCTATGCTTCCTACTATGGATAAAGGTCAAGCTGCAAAGATTCAGGAGCAGGAGAAAATG
CTACGAGATGCTGTAAATGACGGTAAAGgcgaggatggatatgattgcagcagcttgtgaaaat
gcagaaagagtattagctgatactcgtaaagcttacggatttggcactcgtcaagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 184
Transcript exons: 906659-906842
GCGAGGATGGATATGATTGCAGCAGCTTGTGAAAATGCAGAAAGAGTATTAGCTGATACTCGTA
AAGCTTACGGATTTGGCACTCGTCAAGGCCCGTCTATGCTTCCTACTATGGATAAAGGTCAAGC
TGCAAAGATTCAGGAGCAGGAGAAAATGCTACGAGATGCTGTAAATGACGGTAAAG

Genomic sequence GCGAGGATGGATATGATTGCAGCAGCTTGTGAAAATGCAGAAAGAGTATTAGCTGATACTCGTA
AAGCTTACGGATTTGGCACTCGTCAAGGCCCGTCTATGCTTCCTACTATGGATAAAGGTCAAGC
TGCAAAGATTCAGGAGCAGGAGAAAATGCTACGAGATGCTGTAAATGACGGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.298382834
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020