Detail information of AT5G08690_circ_g.1


General Information
CircRNA Name AT5G08690_circ_g.1
ID in PlantcircBase ath_circ_037161
Alias NA
Organism Arabidpsis thaliana
Position chr5: 2826515-2826765  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT5G08690
Parent gene annotation ATP synthase subunit beta-2, mitochondrial
Parent gene strand +
Alternative splicing AT5G08680_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G08680_circ_g.5 5_circ_ag.6 AT5G08680_circ_g.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 AT5G08690_circ_g.2 AT5G08690_circ_g.3
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G08690.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTACTCAGAGACCGAGCATTACTTACCTATTCACAGAGATGCTCCGGCTTTGGTTGATCTA
GCCACTGGGCAAGAGATCCTGGCCACTGGTATTAAGgtacctgttggaagagctacccttggcc
gtatcatgaatgtgcttggagaacccattgacgagagaggcgaaatcagtaagaagtcttagcc
acacccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACCTGTTGGAAGAGCTACCCTTGGCCGTATCATGAATGTGCTTGGAGAACCCATTGACGAGA
GAGGCGAAATCAGTAAGAAGTCTTAGCCACACCCACACTTAATTTATGTCTCACATTCTGCAAA
CTTGTCATGACAATACGTTCTTGCTGTTACTCAGAGACCGAGCATTACTTACCTATTCACAGAG
ATGCTCCGGCTTTGGTTGATCTAGCCACTGGGCAAGAGATCCTGGCCACTGGTATTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.240359194
Functional Information
Coding potential Y
Potential coding position 2826548-2826762(+)
Potential amino acid sequence MNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVPVGRATLGRIMNVLGEPID
ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVPVGRATLGRIMNVLGEPIDERGEIKTEH
YLPIHRDAPALVDLATGQEILATGIKVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP
ALVDLATGQEILATGIK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017