Detail information of Zm00001d035089_circ_g.5


General Information
CircRNA Name Zm00001d035089_circ_g.5
ID in PlantcircBase zma_circ_008878
Alias zma_circ_0002472
Organism Zea mays
Position chr6: 4708890-4713211  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d035089
Parent gene annotation pleckstrin homology (PH) domain-containing protein
Parent gene strand -
Alternative splicing Zm00001d035089_circ_g.3 Zm00001d035089_circ_g.4 Zm00001d035089_circ_g.6
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d035089_T006:6
Zm00001d035089_T007:5
Zm00001d035089_T003:5
Zm00001d035089_T005:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATCAAGCCAAGCAAGAATAGTTGCTGCATCATCCCATATTTTACATTCCATACCAAGCCCA
GAAAACATTGTATCTACAAGCTTCGTGCCAAACCTCcatggcaagttctttcctttcacaattc
tgtgatggtatcctaatgacgaaatgataaatcctcaaatcccaaataagttttttacgattag
cagacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGCAAGTTCTTTCCTTTCACAATTCTGTGATGGTATCCTAATGACGAAATGATAAATCCTC
AAATCCCAAATAAGTTTTTTACGATTAGCAGACATGTACCTTGAATTATGTTCAAAATATTATT
CAACTTGTACAAGCAAGGTACAGTGTGAACAGAAAAAGAAAGGGGAGATGAGGGCATACTTCAG
TTTGGAGACAAGTCTTGTTCCCAAATTATTGAACCGATTTAGAGAAGAAAGTACCTGCATTAAT
CAGGATAGCAATCCATAACATTTCTTGCAGGATGATTTGCATGAATATGCCAATCCTCTCTACC
CAGCATACAGTGTAATTAAGCATTCCGTTGGCCCAATAAAAAATAATAAATGAATTACTGTTAG
TATTAGAGATATGTATGTACTCCAAGTTGTATCCTGGCTAATGGGTGTGAGGTTTCTGGCATCT
GCCCTAGCCATTGTTTTCAAGTCGGGCGACCAGCTGGTCGATCCAGAGGACCGACCAAGTGCCT
AATCGCGATTAGGGCGACGATTAGGACGCCTAACCGGTCTTCTGTCTATTGACTAGAGCTGTAG
AGCAGACAGAAGTCACGGAACAGAACACCGGTGATGTGAATGTGATGGTAAGAACCAAGAAGGC
AAGAACTAGATACTGCAGACATACTGATAATAAGATAGAAAAGGGGGAGGAGGGGAGCTCATCT
TGTCCGTCGTAAGTTGTCACTGGTGCTGGTCTAGAGCCGACGCCGGTGATCTGGAGATGCCGGA
AGTGGGTGTGGAGCCAGTGCGGGTGGACTGCAGCACCCATCGGTTACTGCACTGGACGGCTGCC
GGTGACTGCATTGGACCGTAGCCGCCACGGCTTGGAGAGGGGCGCAGGCAGGGTTTGGTGAGGG
GAGGCAAGCAGTTTATGTGACTGTAGATGGGCCGAAACAACAATAAAGCCCAATAATAAACCCT
AGCCGCCACTAAACTCTAGCGCCAGTGGACGACCAGAAACCTTCTAATCGGACGCCTAATCGGC
GATCTGGACGCTTAATCGGACGATCTGGATGACCAGAAAGTCTGATCGAGTCGTCCAGCTAATC
GGCCACTTTCAGGCAACCAGCCCGACTAATCGTGATTAGTCAGACGACTTGTAAACAGAGGCCC
AAGCTTCTCCCGTGTCATGGACCCACGGCCAAGCATCCACCCCCATCCTGCGACGCCTGTGTGC
GATCTCCTCAGTTCCCTCTCCCTTCGATTGCAAACCTCTACGCATTTCCACACGTTGCAATCCC
TTGACCCGATTGCCCGCTTCCGCACGATCATCTGCGCCACACGCGATTCCCCCACCCACCCGCG
ACCTCTCTCGATTGCAGCCCCACGTGGTCTCCACCATGGTCATTAAGGCATCGCAAAAGCAACG
CTTAAGCGTCGCTTTAGCGATAAAGCGCCCCAAGATGGTAAGGCGTCCAAGTCGCATTGAAGTA
AGCGTAAGCCGTCCACTTTGCAGGTTAAGGCGTCGCATTGGCATCTTAGGACGTCCATGAGGCG
ACGTTATGCCCACTCCAGCTTTCCTCTTCGCCAAGCCGTAGTCGCCACAGCTTCCGCTCCTCTC
ACGTCGCAGCCGCCGGAGCTCCCCCTCCCCCGCAGTCGCATGAGCTTCCCCTCATCTGCAGCCA
CTCCACCTTACCTCTCCGCCAAGCCACAATTGTCGCATATCCCCTCCTCTCATGCCACAGCCGC
CGGAGCTCCACCTCCCCACAGGCTGTCGCTGCAGGTAGGCAGCCATAGTACAGACGCTGCACCA
GGCCCGCAGGCCACCGAGCTCCTCCTCCCCTAGGCCACCGTCGCTTCTCTCTACCCTTCAGACA
GTCGCACCGCAACAACATTAAGCTGCCCTCTCCCTTCAAACTGCAGTGCAACTATGCAATTGTT
GGGATTAGGGTTACGGAGGTAGTACGTTGAGGTCTAGGACCATGACCCAGAGCTTGGGCGTCGT
CGTCCTAGGGTTAGGGCTGATGGTTGGAAGAGATGTGGTACTGTTCACCCGAAACATTGTCACT
TATACACATTGTCAGATGTAAGAAACTATTATGTGTACATCAAAATAAACATATTTGTACAACG
AGTTATCTCTTAACAATGTAGTTATTTAATTTTATCATTTTATATTACATGAAAACATCATCAT
ATATTAGTTTAACGGGTCCCCGCGGGGAACGGGGATGGAGAATGTTTCCCCATCCCCGTCCCCG
TTTACATCCCTGTGGGTTAGAACCTTCCCCATCGCCTAATGGAGAAATTCCCCGTGGGGAATCG
GGGATCGGGGCCCCATTGCCATCTCTAAGCGGGACACCACAGGATGACGCTTGGAGGACCAAGA
GTTGAGGTTAGCACCAAGAAACACTGCATCATCAAAGGTTGACTGGCGGGTGTTTGGGCATCCG
TCCCAGTCGGTGGCGGTGTAGACAATCAGCTCATGGTTGGAAGAGTGCCAAAGGTGGAGGCCGT
AGTCGACAATGCCTTGAAGATACCAAAGGAAAAAAATTGTGTAACCTAGCTCTATACCATGTGG
GAAACCCTAGCCCTAATGAGGGGTTGGAAGTTGTATTAATAGATTGTGTTATGTGGGCCATTGG
TAAATACACGGGGTAGAACCCCAAACCCTAAACGGGTACACTAACAATAACAACCTAATCGGCA
GGCGTGGAAAAAATGCTCGAGGGTGCCCCTAGTAAAAAATGACTAAACTACTACATAGCTTGGA
CAACACAACAAGCTGGAATGGCCGAGACGACAATGCCAAGTACTAGATGTAGTGCAAGTAGTCA
GGGTGTACACCTGCGGTGAGGATGAAGGTGATGATCGAGCGAAAGCAAGATGTGGAGAGGTGTA
CGCAGGCAGACACAGGGTGTACAGGGGCCCAGAGCTATCACAACAGCTGAGGAGACAGAGTAGC
GAGATCCTTCACGAACAAGCCAAAAGTATCAAACTTGGTGGACGAATTATCGGTGGTAAATTGA
TAAACAGAAAAAAGATTCTGAATGATATGTGGGGCAACAAGAACATTGCGAAGATGAAAGGGCC
CAGGGAGAACCGAATCCCGACAGAGATGACAGGAAGAATGTTCCTGTTGCCCACAATTATAGGA
GTGGACAGGCAAGGTGGATCAGTGGATAGGAAGAAGAGAGTATACCAGCGTCCGGAGTGGTGTG
GTAGGAGGCACCGAAATCAGCCACCCAGTCATGACAGCTAGAGGGGTCAAGATCATCATGCTAA
AGGAGATAGCATGAAACTCTTGATCCCACCCATCAGGCCACGGCTTCCAAGAGAGAACTAGCAA
GAGTGTTGATCCCACCCATCTGCAACATCAACGTCTTCTCTTCCTAGTAACTACTGCACCGTGT
TAAGTGTGCTGCTATGCACATCGATAACAACACTTGGCGCCTTGTACCTTGGGGCCCAGCGCCA
ACATTGTGACGGGCAAGTGAAATATTTAAGCACAAGTTCCACTCTGATGGTTCTCTTGCCACCC
ACAAGGCTCATTGGGTTGTTCCATGCAGAATGGTGCCAACTACAATGAGACCTTGAATCAGATA
ATCAAGCCAGCTACCACCCATGCTGCACCCAGTATTGCAGCCTAACATGTTAGCAAACAAAAAA
AATACAGACGGTTATGGTAAGAACAGCAAACATTCTAATTCTATTCTACTATATAAAACTTTTT
AAAAAGTCTCACTTGAGAAATCATTTGCATTATTGGCTATTGTATCCATCCCTTTCTTCATTAC
CAATGTTTGCAGCATTTAACTACTTACCCTATCATGCTGAAATTGGAAAGCGGAAAACACATTG
TAGATGTACAGGACATTAACAAAGAATTCTGGTTCATAGATGGCGTTGAATTCCTGGACAACGA
CCTGAAATGAAACACGACAACATACCTATAATCAACATTCATGAATACCATATATGCAATAAAT
TTAACTCTTAACTGAATTGAAAGAACATAAGTACCCTTGTTGAAGCTTCTGATCTTTCATTTGA
CTTGGGAAAGTCGACTTGGATACTGACAACAGGTGCCCCAAGACCATCACCGGTGCTACACTAA
AATATATATCAATTTAAGAAATATAAGCAACCACAAGAGGGGACGAAAAGATCTGAGGATTAAA
CTGTGGTGTACCTTTTCAGCCCATAAGATTTTCGTTTTATTCAGTGGGTTGATAACCCGAAGAG
AATCAAGCCAAGCAAGAATAGTTGCTGCATCATCCCATATTTTACATTCCATACCAAGCCCAGA
AAACATTGTATCTACAAGCTTCGTGCCAAACCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.093462726
Functional Information
Coding potential Y
Potential coding position 4712770-4708919(+)
4713185-4713157(-)
Potential amino acid sequence MALNSWTTTLVEASDLSFDLGKSTWILTTGAPRPSPVLHFSAHKIFVLFSGLITRRESSQARIV
AASSHILHSIPSPENIVSTSFVPNLHGKFFPFTIL*(+)
MFSGLGMECKIWDDAATILAWLDSLRVINPLNKTKILWAEKCSTGDGLGAPVVSIQVDFPKSNE
RSEASTRVVVQEFNAIYEPEFFVNVLYIYNVFSAFQFQHDRVLSSLNRFNNLGTRLVSKLKYMS
ANRKKLIWDLRIYHFVIRIPSQNCERKELAMEVWHEACRYNVFWAWYGM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b