Plant Circular RNA Database

Detail information of Os02g0777100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0777100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016746
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 32861242-32869182  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0777100						
					
						Parent gene annotation
						
							DENN domain containing protein. (Os02t0777100-01);Hypothetical c
onserved gene. (Os02t0777100-02);Similar to predicted protein. (
Os02t0777100-03);Similar to predicted protein. (Os02t0777100-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0777100_circ_g.2 Os02g0777100_circ_g.3 Os02g0777100_circ_g.4 Os02g0777100_circ_g.5 Os02g0777100_circ_g.6 Os02g0777100_circ_g.7 Os02g0777100_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0777100-04:2
Os02t0777100-01:16
Os02t0777100-03:1
Os02t0777100-02:2

General Information
CircRNA Name	Os02g0777100_circ_g.1
ID in PlantcircBase	osa_circ_016746
Alias	NA
Organism	Oryza sativa
Position	chr2: 32861242-32869182 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0777100
Parent gene annotation	DENN domain containing protein. (Os02t0777100-01);Hypothetical c onserved gene. (Os02t0777100-02);Similar to predicted protein. ( Os02t0777100-03);Similar to predicted protein. (Os02t0777100-04)
Parent gene strand	-
Alternative splicing	Os02g0777100_circ_g.2 Os02g0777100_circ_g.3 Os02g0777100_circ_g.4 Os02g0777100_circ_g.5 Os02g0777100_circ_g.6 Os02g0777100_circ_g.7 Os02g0777100_circ_g.8
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0777100-04:2 Os02t0777100-01:16 Os02t0777100-03:1 Os02t0777100-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TAAATGCTCTCGCTACCTCTTCAGTTGTTTGCATCAGGTGTGATGTGTTGAATTTGAGCCCTTC
AGATCCATCGTTCTTGTCCACCATTCTAAATGCTTCcttgtcattgttggattgcacattagta
atcgtatgagatctcaagttggaacacagcgaatcaaggtaggatctaagcactgccaagaaac
ctttggca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TAAATGCTCTCGCTACCTCTTCAGTTGTTTGCATCAGGTGTGATGTGTTGAATTTGAGCCCTTC AGATCCATCGTTCTTGTCCACCATTCTAAATGCTTCcttgtcattgttggattgcacattagta atcgtatgagatctcaagttggaacacagcgaatcaaggtaggatctaagcactgccaagaaac ctttggca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.099237127

Conservation Information
Conserved circRNAs	NA
PMCS	0.099237127

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							32869172-32861244(-)
32861266-32869118(-)
						
					

						Potential amino acid sequence
						
							MVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSPMQKLQQQF
SKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVGLPPQADIH
ELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDILSFCLPGGV
QVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQRPSKLVSML
TSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLLTSLSPEET
CEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLDLNCKEVQQ
ECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTENCGYSLQD
DVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPSSIGHGDLV
GHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVLHIAGSTID
LRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQIIIVCSNLG
MLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLVNAVVIDAN
KNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFLAVLRSYLD
SLCSNLRSHTITNVQSNNDKEAFRMVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQS
TRPSVVYSSREESGSPMQKLQQQFSKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNR
CIREPSHLFESIVIVGLPPQADIHELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLF
AYPPERPLPLKYKDILSFCLPGGVQVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADD
STLYGCCVLVEEIVQRPSKLVSMLTSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSI
LMEERLEWLTDGVSLLTSLSPEETCEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKE
LSDTDSSSECRDNQLDLNCKEVQQECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELH
ELDSVPVILKESDTTENCGYSLQDDVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEG
INFRSDSHESDLEEPSSIGHGDLVGHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPL
DHLHPLRFHRPGETVLHIAGSTIDLRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRL
EHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPY
IVGVQNKTSDVHSRLVNAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRP
VYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNNDKEAFRMVDKNDGSEGLKFNTS
HLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSPMQKLQQQFSKILKGFSTSPEVSGS
YNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVGLPPQADIHELENIALGSNEEDVKK
PRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDILSFCLPGGVQVHAVERTPSFSELNE
ILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQRPSKLVSMLTSEKPVFPRRSRYVIT
TPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLLTSLSPEETCEDDVVCEGTELATEK
QYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLDLNCKEVQQECVVQDDLVTGTAPQC
DTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTENCGYSLQDDVNDEQLDIFVNDTIL
PLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPSSIGHGDLVGHNNISQWAKAKKYGS
LQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVLHIAGSTIDLRSCDTSLEVAEMRNA
LFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPY
QWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLVNAVVIDANKNQIKSTSVPQLPQQK
ELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQS
NNDKEAFRMVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSP
MQKLQQQFSKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVG
LPPQADIHELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDIL
SFCLPGGVQVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQR
PSKLVSMLTSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLL
TSLSPEETCEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLD
LNCKEVQQECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTE
NCGYSLQDDVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPS
SIGHGDLVGHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVL
HIAGSTIDLRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQI
IIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLV
NAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFL
AVLRSYLDSLCSNLRSHTITNVQSNNDK(-)
MCNPTMTRKHLEWWTRTMDLKGSNSTHHT*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	32869172-32861244(-) 32861266-32869118(-)
Potential amino acid sequence	MVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSPMQKLQQQF SKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVGLPPQADIH ELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDILSFCLPGGV QVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQRPSKLVSML TSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLLTSLSPEET CEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLDLNCKEVQQ ECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTENCGYSLQD DVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPSSIGHGDLV GHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVLHIAGSTID LRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQIIIVCSNLG MLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLVNAVVIDAN KNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFLAVLRSYLD SLCSNLRSHTITNVQSNNDKEAFRMVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQS TRPSVVYSSREESGSPMQKLQQQFSKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNR CIREPSHLFESIVIVGLPPQADIHELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLF AYPPERPLPLKYKDILSFCLPGGVQVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADD STLYGCCVLVEEIVQRPSKLVSMLTSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSI LMEERLEWLTDGVSLLTSLSPEETCEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKE LSDTDSSSECRDNQLDLNCKEVQQECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELH ELDSVPVILKESDTTENCGYSLQDDVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEG INFRSDSHESDLEEPSSIGHGDLVGHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPL DHLHPLRFHRPGETVLHIAGSTIDLRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRL EHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPY IVGVQNKTSDVHSRLVNAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRP VYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNNDKEAFRMVDKNDGSEGLKFNTS HLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSPMQKLQQQFSKILKGFSTSPEVSGS YNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVGLPPQADIHELENIALGSNEEDVKK PRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDILSFCLPGGVQVHAVERTPSFSELNE ILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQRPSKLVSMLTSEKPVFPRRSRYVIT TPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLLTSLSPEETCEDDVVCEGTELATEK QYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLDLNCKEVQQECVVQDDLVTGTAPQC DTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTENCGYSLQDDVNDEQLDIFVNDTIL PLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPSSIGHGDLVGHNNISQWAKAKKYGS LQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVLHIAGSTIDLRSCDTSLEVAEMRNA LFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPY QWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLVNAVVIDANKNQIKSTSVPQLPQQK ELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQS NNDKEAFRMVDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREESGSP MQKLQQQFSKILKGFSTSPEVSGSYNPEVLTTQKRQWSRFQLKSLGNRCIREPSHLFESIVIVG LPPQADIHELENIALGSNEEDVKKPRNIFGNNHHQVHALSNLEPQVLFAYPPERPLPLKYKDIL SFCLPGGVQVHAVERTPSFSELNEILLGQEQLKESNQSFVFRLQVADDSTLYGCCVLVEEIVQR PSKLVSMLTSEKPVFPRRSRYVITTPRCYCIFSRLPFFELHFGVLQSILMEERLEWLTDGVSLL TSLSPEETCEDDVVCEGTELATEKQYFDGHAVDLEKSSESSVGVCSKELSDTDSSSECRDNQLD LNCKEVQQECVVQDDLVTGTAPQCDTLERPDNCLSEDTTADQSGIELHELDSVPVILKESDTTE NCGYSLQDDVNDEQLDIFVNDTILPLMRSRLCEGSELSPGSQDSPSEGINFRSDSHESDLEEPS SIGHGDLVGHNNISQWAKAKKYGSLQVVSQYYQLQCPARGSSLTFHPLDHLHPLRFHRPGETVL HIAGSTIDLRSCDTSLEVAEMRNALFAEEESTALSTWAVASICGCLRLEHVMTLFAAALLEKQI IIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLV NAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFL AVLRSYLDSLCSNLRSHTITNVQSNNDK(-) MCNPTMTRKHLEWWTRTMDLKGSNSTHHT*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0777100_circ_g.1

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