Detail information of BGIOSGA002514_circ_ig.2


General Information
CircRNA Name BGIOSGA002514_circ_ig.2
ID in PlantcircBase osi_circ_000002
Alias NA
Organism Oryza sativa ssp. indica
Position chr1: 1004082-1004534  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA002515_circ_ig.1 BGIOSGA002514_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-GT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAATAATTTGTAAGACAAGTTGAAAGTTAATACTTCTACAGTAAGGAAACAATAATGTACCAG
TATCATATAGACTATGAGCAGAGAGATTATATGGTGctaaattttacggcaactgtcaattgtt
tgtgaaactctaatagaaaatgttagtataagatttatttgcacatagtgtctttgttaaagtc
taggttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAATTTTACGGCAACTGTCAATTGTTTGTGAAACTCTAATAGAAAATGTTAGTATAAGATTT
ATTTGCACATAGTGTCTTTGTTAAAGTCTAGGTTGGTAGATCAGGAAGATGATCTCACAATTAT
TTAGGCTTAAGCTAGGTTTGATCCAAATAACAGGTCATTGGTAATTACAAACTATTTTTCCCTT
TTCCTTTCGCTCCAAACCAAAGTAACTGTTCAAAATAGTGCTATGCTGTACACAAATGAAGGTG
CACTAATGAAAACTCACAAACTGTACAGCGATAAATAGAAGTATTAACACTCATAAATGGTGAT
ATAACGCTGTTTTCTGGAATTTATGTGACAATTCCAATAATTTGTAAGACAAGTTGAAAGTTAA
TACTTCTACAGTAAGGAAACAATAATGTACCAGTATCATATAGACTATGAGCAGAGAGATTATA
TGGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019