Detail information of BGIOSGA002897_circ_g.4


General Information
CircRNA Name BGIOSGA002897_circ_g.4
ID in PlantcircBase osi_circ_001855
Alias 1:4829317|4833985
Organism Oryza sativa ssp. indica
Position chr1: 4829317-4833985  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA002897
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002897_circ_g.2 BGIOSGA002897_circ_g.3 BGIOSGA002897_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA002897-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATATATACAATACCGCAGGGTATAGCGAAGCTAATGCTTTGTCCTTAGAAGCATCCATCCAA
AAAAGTGTTGAGGAAGAACTATACTCTTCCCTTGAGgctgatggttttagctgtgcgctttgcg
acgagaatgatcaaatgctatgggctacttaagcaaaataagggtaagatcttttattttgcac
catttatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGATGGTTTTAGCTGTGCGCTTTGCGACGAGAATGATCAAATGCTATGGGCTACTTAAGCAA
AATAAGGGTAAGATCTTTTATTTTGCACCATTTATTTTATTTGTGTTATGTGAGACTTACCCTC
TATTTCTCAGATGCACCAGATAATTCAGTAAAACTTCATGAAATGGCTTTCCTTTTGGGGGTAA
TTAGAAGTATCCAGAGCCGAATCTCTGCAAAGAACCAGAATTCTATTCGGATGGTAAAATGATA
ATAATTCCTTTTTGTACACATGTAGTCGTACTTGTACTTTGGATGATCCTTCTTATTTGGTAAT
CCTGTGGTTATTTTGTAGCAGGGTGATGACAAAAACTCATCGAAAATAGGTGCAGAAGTATCAC
TGAACACTTCACTGCCAATTGTTGTAGTGGATGGTGTTTCAGCAGGACAATCAGGTGGTATAGA
ATCTCGTGATAGGCAAGAGTCAACACCTGCGATGTTTGAGTTAGTTTCTGGTAGCAATGGACAA
TTAGCTTTAACTCCAGTTGAATCCTCTATTAGTGCTACTATGCATCATGCCATTGATACTGATC
AAGTTGTAATACCAAGTACTCAAGGAAATATCAAAGATATGATGAACCGGTGGGAAACGAATAA
TCTGGACTTGAGAACTGTAGTAAAAGAAGCACTGCAGTCTGGTAGACTACCTTTGGCTGTCCTT
CAATTGCAACTATTGCGCCAGAGGGAATCATTTTCCAACGATCCAGAAGATGTTTTCTCTGAAG
TTCATGAAATAGGAAGGTCCATCGTATATGACCTGTTAATGAAGGTAATGTAGTACTCCATACC
ATTTGCTTAACACGTGTATACTCTCTACATTTCCTGTCATCTAATGCTTTTATCTGCAGGGTGA
AACTGGATTGGCTGTCGCAACCCTGGAAAGACTAGGAGATGACATAGAGTCAGACCTCAGACAA
CTTATGCAAGGTACAGTCAGGAGGCTACTTAGGCGGCAAATTGCCGAGGAGATGAAGAAGCGTG
GGTACATGAGTTCAAATGAGTGGAAGATGCTGGAGATAATATCATTGATTGAGGTTTGCTTCTA
CCCCCTGCTTTAGCTAATTGGGAAAATTATGATATTTCAATATATTTTGTTTTTGTTCATTTGG
TTCCAATTTATAAAAGATCAAAATGCTGGCTTGATATTTGCTTTCATAGTGATCAACCTTTTTT
TTTTCTCTGTGGAAAAGCAATTTTACCCAAGCAGCAGTTTCTGGGACACGTATCTTGGCAGGGA
GAATGTCATTCACGATGCTGCAAAAATTGTTACTCTACCAGGAGAAGATAAACCAGTACTAGTT
CTCGATATTCATAACCACTGTCCTATTGAATGTGGTGATGTTGATGGAGCTGTGATCGGTTCTT
GGGCGAATGTGAATGATTACACTAATTTGAAGGAGTTCTCTGAAAGCAATTTATCTGATGGTTA
TTGGGCCTGTGCTGCCATATGGTCTGATGCTTGGGATCAAAGAACTGTGGACCGTGTAAGTCAC
GACTTAACATTTTTGCTTGTTAGTATTGAGATTGCACCTTATTTCTGATTGTGGCAATGTGCTG
TAGCTTATCTGAAAATGTAAAAGAATTTTGCTAGTCTTGTTAGATCTGTCCAATCACTGTGAAA
TCAAGTGGAATTTGTTATGCTATATATGGGATAATTATGTATTTCCAACTCATCGCAAGATCAA
TTTGACCATATATGTTGCCACAGAAATAATGATAATGTTGGTCTGTGTTATTCATTTTCCCTTT
CGTGGAAATGTGTTTGGTATCACCTTAAATTTGTTGGTGTGATGCTTTTTGTAATGAACTAAAT
TCTGAACTAGGGCCTGAATTAATTTTGGTATAGTCATGGACTTATGGTTCTTATATGCTCTATA
GATTATACTGGACCAGCCTTGTCACGCACATGCGTATGCTCATTTCTCATGGGAATCTCAGTTT
GAATATTTTGTTGCTCATAATGATGTGCTGGAAGTCTGCAAACTCCTGGACAGTATTCCTGACA
GTGTACTTCTAGAAGGGATTCTTAGAGTGAATGTGGACAATTCACAAGCTACTTACAACACTCT
GTCTGACGTAGCAACCCACGATTATAAAATGTACTTATTTGACTCAGAAGAGATAGAACCTGTT
TGTATGGAAATACCACATGTCAAAGTGTTCAGATCTTTGTGTAATCATGAATCAACTTCTTGGA
TGAGAATGATCATGCTACAGGAATTGGCAAAGAAGCATATCTTTATGAAAGAGTACTGGCAAAG
CACTACTGAAATTATACCTATACTTGCCCGCGCGGGCATGCTTGTTAATACTTCAGAGCTTTGT
TCAGATGTTCTACATGGTGCATACCACCAGGATTGTGACGGAGCATTACACAAATTAGTCCTAC
GCTTCTGTGTGCAGTATAACACACCAAACCTACTGGACCTCTATCTGGACTACTGTAACTTGGC
TCTTGAAAAGGATTCTATTCCTTTGCTCAAGGAAGCTACTGTAAGTTTTTGTTCAATTTTAGTT
TATGATACTATTTGATGTTCAATAGTATTCTCTGGAACCTTTGATAATCACCTACCTAATTTCT
CAATTATATGACCAATACAATTGTAGACTTTATGACCAGATGATATTTGTCAATAAACTAGATT
ATTTAGTTTAGGATATATACTTGGTGACTTAGCCTTTACATGTTTTTTTTTAAAAAAAATTCTG
GGCTTACAATATTCTTTAGAAAAATACCAAAAAGGTCAAACTTGCCAAATCTTTCAGTTTTACT
GTGAGATTTGGCCTACCCTCCTAAGCATACTCCGTACAAAGTGACTTTAGTTCTCACTTACTTT
GCAAGCTCATTCTCTTGAATAGTAAACCAATTATTATCAGAAACTGCTAGCACCGTTCGAATGA
GAACATTGTTGCATTCACGAAGCCTGCCTTAATATAATGCCCAGGATTTTATTAGCCTGCAGCT
ACAGCGGATTATTCCATCTATCTGACTAAAGATTTGCCTTACTTGCCGATACTAGGAACAGCTG
TTGTAGCTACTTTGATAGTAGAGACTTGCTGTTATAGCTACTTTGATACTAGAGACACATGCAT
ACTGTTATGGCTAATTTATGGTCAATAGTGTCAATACTCTAGTTGTGGTACGGGAAGTACTTGG
CATGCTTCCTTTCATCATAGATGTAAGATTAAGCTTCTTAACATGCTTGTCTGTTGTTTCTTCA
TTATAACTTATAGTAGGAGTAAGCCTCACCTAGCTGCTCTGTCATGAAATTTTCAGGGTGATTG
CAAGTGGGCGCAGTGGTTACTCTTCTCCAGGGTCAAAGGTTATGAATACGAGGCATCCTTTTGT
AATGCACTTTGGAATCTGTCACAGGAAATGGTTAGGCATAACAATCTTGCTGCTATTGAGATAG
ATGAAATACTGTACACTGTTGATGATATGGCTGAACGAATCGGGGAAATGTCTGCTCTAGCAAC
CCTGATGTATGCTTCAACACCAATTCAGAAGTCCATATGTACTGGAAGTGTGAACAGAAATCGT
GGGGTATCTTCTCAGTGCACATTAGAGAATCTAAGCCCTCACCTTCAGCAATTTCCAACACTAT
GGAAGACCCTTCTTTCTTCTTGTTTTGGGCAAGATGGGTATGGTTGTTTAAACTGTTCTCCAAC
TAATGGTAAACAAAATACAGATTTTTTCCCTTCTTTATATTAGAATGTTCTTGTTTTCTATGTG
CTACACAGAAATTGAATTATATTTCCTTTTCAGAGTTTGGGAAATCACCAATTTCAGAGTATTT
GCGCTGGCGCTATAACATTTTTTCCTCAGCTGGAGGAGACACTTCATTGTTGCAAATGCTCCCA
TGTTGGTTCCCAAAGTCTATTAGAAGATTAGTTCAGCTATTTGAACAGGTTTGTCTTTAGTTTG
GATAACAGCATGTAACACTTTCGAATTTAATCCTTGGTTTTTATTTTGTCCTGTGTAATATAGC
CTTTACTGTATTACTGCACAGGGTTTGACCCGCCTAGAAAAATGCATATCACCCTAGACATGTT
ACTGTTCATATCTTGGCATGAAAAAAAAAAGGAGTTTTCTCCCAAAATTTCCCGCTTTGTGGCA
TTTTAACTTCAGACAACACATAATAGTGAACAAACAAAAATGCCTCACATGCCACATTACCACC
AATATATTGTTTGTGCTGGTTCCTGTATGTTTTGTAACCCTACCCCATGACATTAGTTGGGTTT
TAGGTTTTTATTCCATAAACATGGAAATATTGCTGGATTTGTTATCTTTACTACTTTAAAAGGA
GATGGCTAATCATGAATCGAGACCAGTACAAAATTACTGATATGCAATGGTAATTTAATTCATT
ACATGTGGTTTACATAAGTTTTGATTTTGTTCACAGTTTGAGAGATACTTTTGTGGTTTTATTA
ACCATAATCTATGATCAGGGCCCTTTTGGAATGCAACTGCTATCAAATGCACCATCATCCGAAG
AGTTATTTACTCACAGTGTCACAGATTATATATACAATACCGCAGGGTATAGCGAAGCTAATGC
TTTGTCCTTAGAAGCATCCATCCAAAAAAGTGTTGAGGAAGAACTATACTCTTCCCTTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021