Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G24710_circ_g.1 |
ID in PlantcircBase | ath_circ_040263 |
Alias | Ath_circ_FC3505, Ath_circ_FC5764 |
Organism | Arabidpsis thaliana |
Position | chr5: 8460357-8463184 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT5G24710 |
Parent gene annotation |
Transducin/WD40 repeat-like superfamily protein |
Parent gene strand | - |
Alternative splicing | AT5G24710_circ_g.2 AT5G24710_circ_g.3 AT5G24710_circ_g.4 AT5G24710_circ_g.5 AT5G24710_circ_g.6 AT5G24710_circ_g.7 AT5G24710_circ_g.8 |
Support reads | 12 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G24710.1:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.139279244 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8463086-8460359(-) |
Potential amino acid sequence |
MPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYC AFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRK MKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSL PRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCA HAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF DLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEFLD LIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLSVIGLHGGALLG IGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENF EPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVAT PTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPP MLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPV GPLVVAGVRDGVLWLIDRYMCAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQF MLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTA TKKEDVVEAVEGIVKFAKEFLDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLR LANHGELTRLSVIGLHGGALLGIGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDG FSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYL GDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAEHGE LALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIMDERRVNEV AVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCAHAISLNHPGIRCRCLAAYGD AVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALHCLLTMS NSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEFLDLIDAADATGHADIAREALKR LATAGSVKGALQGHELRGLSLRLANHGELTRLSVIGLHGGALLGIGYRTSRRISPVAATAISTI QSMPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVE YCAFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIET RKMKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFL SLPRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYM CAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRL EFDLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEF LDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |