Detail information of AT5G24710_circ_g.1


General Information
CircRNA Name AT5G24710_circ_g.1
ID in PlantcircBase ath_circ_040263
Alias Ath_circ_FC3505, Ath_circ_FC5764
Organism Arabidpsis thaliana
Position chr5: 8460357-8463184  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G24710
Parent gene annotation Transducin/WD40 repeat-like superfamily protein
Parent gene strand -
Alternative splicing AT5G24710_circ_g.2 AT5G24710_circ_g.3 AT5G24710_circ_g.4 AT5G24710_circ_g.5 AT5G24710_circ_g.6 AT5G24710_circ_g.7 AT5G24710_circ_g.8
Support reads 12
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G24710.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGACTGAATGGTTGAAATAGCTGTTGCAGCAACAGGACTAATCCTTCGGGATGTGCGATAACC
TATACCAAGTAGAGCACCACCATGCAGACCAATGACacttaggcgtgtcaattctccatggttt
gctaggcgtaatgaaaggcctcgcaactcatgaccctgtaaagcgcctttgaccgaacctgcag
ttgccagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTTAGGCGTGTCAATTCTCCATGGTTTGCTAGGCGTAATGAAAGGCCTCGCAACTCATGACCC
TGTAAAGCGCCTTTGACCGAACCTGCAGTTGCCAGTCTTTTGAGAGCTTCGCGAGCAATGTCGG
CGTGCCCTGTGGCATCTGCAGCATCTATAAGGTCAAGAAACTCCTTTGCAAATTTCACTATTCC
TTCCACAGCTTCAACAACATCTTCTTTTTTAGTAGCTGTCAAAGAGAGAATGTCACTCAAATCA
AGGCCTACACCGTCCTGTCCAATGTCCTTGCTATTACTCATTGTGAGAAGACAATGAAGTGCCC
TCTTAAGATCATTGCTCTGCATTGCTAGGTCAAACTCCAGCCTGAGAAAACATAAAGTTAAGTC
AAACTCGGAACCTAAGTCAAAGTGAAAAAAAAATCTCTGATGCCATTTTGGTTGAGTTGAACGC
TAGGATGAAGGATTCAATACATGAGTGAAATACTGAATTCTGTTTACTGTCCAGCATAAGCAAT
TCAGAGACTAGAAAAAACTGTCTATAGTAGAACCAAATTGAAGGAAAAGCGGCACCAAAATATT
ATATGTTTTATTTACCTCTTAGATATTCCAGGCAAATGAAGAGCTTCTGTTGCGTATCCCATCC
CTAGCATAAACTGTGCCAGATCGTCATGATGTTCTCTCCCAAGCCTACTTGCCCTGCGCAAAAA
AAATGTTGTATAAGGATTCCAGCTACTTAACTACTCACATAAACACGAGATTATGAGAAACATA
TCCATACCATTTAACTGCACTAACAGCATCCCCGTAAGCAGCAAGACAGCGACAGCGGATACCA
GGATGATTAAGGGATATGGCATGGGCACACATGTACCTACCAAGAAATGGAAGGAGGTGTCAGA
CAATAATTTCTATCTTCTGTCTAATATTTCTTTATTCATTCAAGCAACTAAAATGACTATCATG
GCAAGATATTGTATTCAAGCTTAGTGCTCGAGGAAACTTTGGAATGCAGAATGTCAGATTTCAG
TGCCTACCTAGTGCATAATATAAATGGAAAGGAAAATTCATAATCTAATTAAATATAAATATCT
CAAATGAAGATAAAACGATTCACCAATTCATACAGTCAGCATCGAACAAGGAATGTATTAACAA
GAGTCAGTCTTGTCGTAAGGTAAGAACAGGAGACTCATAGTACCTGTCAATGAGCCAAAGAACT
CCATCCCGCACACCGGCAACAACAAGAGGCCCCACTGGTCGTTTTTGCTCCACTGGGAAACGAG
TAACAGCAACTGAGACTCCTCCACCACCCACAGCTACCTCATTGACCCTTCTTTCATCCATTAT
GTCATCGCTATCACCTCTAGATTGTCTTGGCAATGATAAGAATGGTGGAACAGATGGAGCATTT
TGGAAAGAAGCTAAACGCACCACCTACAATTAAAAGGTATACACATAAGGAAGACTCTTGCTAG
TTTGACATGAATTGACATAGATGTCGACACATATGCAGTACAAAACAACACGCTTAGACCTTAA
AAATTATGCTTCCCAATAGCTTACAATATTTTCAAGTAAAAGTAAGAAAAATCTACCTGCAGCA
TGGGGGGCCTTAAAGATATCCTTTCTTGCTTTGCAGCCTGGGAACCTTCTACTGTGATTAAGGC
CAACTCTCCATGCTCTGCAACTGCTCTAGCCTGCGCCTCCTTAAGTTTCATTTCTTCCTTCATC
TTCCTAGTCTCTATATCAATTTCGGAAACTCCCGCATCCACAAAAACACATCTGGAAATCCAGG
CATGGAAGAAAGTATTAGCATTCCTCCCCAGATATTTGTTTTAAAAAGTAGCAGATAAAGGTAG
CCATGCGTTTAACAAATTCAGAATTAGAGCAATTCTTTTCAAAACATAGTAATCTCTGAAAAGT
TGGATTATGCACCATCTGAATAATCAATAATTGTTGATACACATCCACCGCAAAAACACAGATT
CAATTTTTAGTTTGTTTCATCCAAGTGGAAGTAGCATTTAAGGTAACTGGCAGAAGACAGAAAA
AAATCATGTATCATATATAGAGCAATATGCTTACTCAATCGTGGTTGGTGTAGCCACAAACAGC
TGTCTGCGATGCCAAACAGCTCCAGTAGCATGTGCAATGGCAACATCACCAAGATATCTATACT
GAGGGCGCAAGGACGATATGACCATGTATTGTTGATAAGCAAAAGCACAGTATTCAACTGTTTG
GTCCCATGCCGTCCATTCTGGCTGAGGTAGCATACCACCTACTGGCTCAAAATTTTCCCAACTA
CACATTAAAAATTCCATTTAGATAATAGAGAACTGAAATCCTTCAAACAAAATTAGAGCTAGCC
AAAACATAACTATGGGAATCAGTACAGATTGGTGAACAGTGCTTATTATTCCATCAAACAAGAG
TAACTATCTCCCAGACATCTCAGAGGAGGAAAAAAGACTCTGATTTGGTCAATATAGCTAACTA
AAGAAAATGAAATGTAATAAAATATGCCCAACAGCTAGCTGCCTGCACACTATTTTAGTAAAAA
GAGTGCTAACAGAAATGAGCCTTGCATAAAAATAAGAAGGACAACGCTAGTTTTACCTGTAGAG
CTGGTAGTTTAGGGGTGCAGACTCAGCAGACTTCTGCGAAGAAAACCCATCATCATAGCTAGAA
AACGAAGAAACATTGCTGTTTCCAAATCCCGAGAGTGGCATCGACTGAATGGTTGAAATAGCTG
TTGCAGCAACAGGACTAATCCTTCGGGATGTGCGATAACCTATACCAAGTAGAGCACCACCATG
CAGACCAATGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.139279244
Functional Information
Coding potential Y
Potential coding position 8463086-8460359(-)
Potential amino acid sequence MPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYC
AFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRK
MKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSL
PRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCA
HAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF
DLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEFLD
LIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLSVIGLHGGALLG
IGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENF
EPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVAT
PTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPP
MLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPV
GPLVVAGVRDGVLWLIDRYMCAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQF
MLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTA
TKKEDVVEAVEGIVKFAKEFLDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLR
LANHGELTRLSVIGLHGGALLGIGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDG
FSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYL
GDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAEHGE
LALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIMDERRVNEV
AVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCAHAISLNHPGIRCRCLAAYGD
AVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALHCLLTMS
NSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEFLDLIDAADATGHADIAREALKR
LATAGSVKGALQGHELRGLSLRLANHGELTRLSVIGLHGGALLGIGYRTSRRISPVAATAISTI
QSMPLSGFGNSNVSSFSSYDDGFSSQKSAESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVE
YCAFAYQQYMVISSLRPQYRYLGDVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIET
RKMKEEMKLKEAQARAVAEHGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFL
SLPRQSRGDSDDIMDERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYM
CAHAISLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRL
EFDLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAKEF
LDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLS(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a