Plant Circular RNA Database

Detail information of Os11g0271100_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os11g0271100_circ_g.3
					
						ID in PlantcircBase
						osa_circ_009053
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 9474666-9477686  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0271100						
					
						Parent gene annotation
						
							Similar to Blast and wounding induced mitogen-activated protein 
kinase. (Os11t0271100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0271100_circ_g.1 Os11g0271100_circ_g.2 Os11g0271675_circ_g.1 Os11g0271100_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0271100-01:7

General Information
CircRNA Name	Os11g0271100_circ_g.3
ID in PlantcircBase	osa_circ_009053
Alias	NA
Organism	Oryza sativa
Position	chr11: 9474666-9477686 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0271100
Parent gene annotation	Similar to Blast and wounding induced mitogen-activated protein kinase. (Os11t0271100-01)
Parent gene strand	+
Alternative splicing	Os11g0271100_circ_g.1 Os11g0271100_circ_g.2 Os11g0271675_circ_g.1 Os11g0271100_circ_g.2
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0271100-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCAACATCGCCGAGGATCTTTCAAAATGTGTACTTGGAGATAATACACAAAAAATGCATCAAG
GTTCTGCTTCTGTTTGTGCGAATAGAGTTCCTCAAGcaaatgtgtttcaccgagatcttaaacc
aaaaaatattttggcaaatgctgattgtaagctcaaaatatgtgattttggccttgcaagagtt
gctttcag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAAATGTGTTTCACCGAGATCTTAAACCAAAAAATATTTTGGCAAATGCTGATTGTAAGCTCAA
AATATGTGATTTTGGCCTTGCAAGAGTTGCTTTCAGTGATACACCAACTGCCATCTTTTGGACG
GTATATCACTTTTCCCCCAACAATTTCTTTATGTCCTCAAAGTTTCTTATAAGCATCTATTTCT
TGTATTTTTAGGATTATGTTGCAACAAGGTGGTATCGTGCACCTGAACTTTGTGGATCTTTTTT
CTCTAAGGTTAGTCACCTTCTTAATATGTTGTAATTTTTTTATTTAAATCATGGTATTTCCAAG
AATACCCTTGTTTCCATTTCATTATTGTTGTTATATTTTTCTCTTTTACTGAAGTTAAATTCAC
ACTAAAACACATGGATGATGGATGAAACTATAAAAATAAAATCCCAACTGGGCCATGGCATTCA
ATTAAGTTGAGAAAAATCCTCCCAAACGTGGTGCACGACTGGTGCACTCAAACCTCCCACGGGG
AGCATACTTCTTCCAGTTCCTGTGAGGGGGATTATTTTTGTGTGAAGCCCGGTTCGAACCTGGG
TCAGCGGCTCTTCTACTGAAGGCTCTGCCACTCCGCTACAAGCACGTTAATTTCCTTCTTTATA
TATTTCTATTAAATGATGTATTTCTTTCTCTTAATCTAAGTGCAGTAGTATTTCTAATAAAGAC
CAAACACATAGATGTGCCAATCTGCTATTCTGCTATCGGTTTTGTTCTAATTATTGTGTTGCCA
CTAGCTGCTTGCAAAAGTCACCAAAACGCCACTGCCATTAAATCGAATTGACATGATTAGGTCA
ATTTCTATTGACCATTTATGCACATGTGCCCTTCGAAAATCATAAGAGAAAAAGGAGAATCTAA
GTGTGGCCTACTGCTCTGCCAATGGATTGCAGCTTCCATGTCCATTTTGTTGGCTATGGTGTGG
CAAGGGCAGAAGCTGAGGTCAAGCAGCCTGTCAGTGATTTTTTTTAATGAAATTGTTCATCTGA
TTTGGGTTTTCTATTCTTGACAAACGATAGTATGTATTGGTACCATATTGTGAATTGAGCATTT
GAATGAAATCCTGCAAATCAATCCAGTAAATAGGGGTGCTGATGCATTGATGGGCACCACTATC
ACGTTGCATGGGAAATATATAAGAGAGATGGAGAGCATGAGAGAGATAAGAGAGGAGATGATGA
TTCAGGATACCTCAGTCCTGTCAGTGGCTATGTCAGTAGGTTTATATTAAAATTTAGGATCTAG
ATAAGACACATGACAAGTTTAGGAGTCCGTACGGGGAGCTAGCTGACCCATCACAACAAGTTGA
AGGACAGCTAGTACATTTTACTTCTTTTAATACAATATCACCTTTTTCATTACTGACGATGTCC
TGTACTCCTGTTTGTTGCTCTTGCAATGAAATGCTGTCTAGTTCCAGTTGCTGGCTATATTTTT
CTTTGTACATATAATGCCTGGAGTATCGGTGAACCTTATACTGTTCAAATTCTTGCAGTACACA
CCAGCAATAGATATATGGAGCATCGGTTGCATATTTGCAGAACTTTTAACAGGAAAACCTCTTT
TCCCCGGGAAAAATGTGGTGCATCAACTTGATATAATTACAGATCTTTTGGGGACACCTTCTAC
AGAAGCAATATCTAGGGTAAGTATGTGTCGCCATACATAAGTGTTTTATGCCGACTAATTTTCT
AATGGTTGGAGTTACATGTACTCTTTATGCACTAGATTCGAAATGAGAAGGCCAGGCGATATTT
GAGCAGTATGAGACGCAAAAAGCCTATACCATTTACTCAGAAGTTCCCAAATGCAGATCCACTT
GCATTACGTTTGTTGGAGAGAATGCTATCTTTTGAGCCCAAAGATAGGCCAAATGCTGAAGAGG
TACAACATCATCCCTTTTTATTTTATTTTTAATCATGGTAATCTAAAACAACAAAAGATAATGT
ATTGTACATATTTTCAGGCTCTTGCCGATCCTTATTTCAGAAACATAGCAAATGTAGATAGAGA
ACCTTCAGCACAGCCTGTGACAAAGCTGGAATTTGAGTTTGAAAGGAGGAGGATTACAAAGGAA
GATATAAGGGAACTCATCTATAGAGATATTCTGGAGTATCATCCAAATATGTTGAGGGAATACC
TTGAAGGGACTGAGTCAGCTGGTTTCATGTACCCTAGGTGCGATGATTTTTAACTACAACATGC
TTCACCAAAGTGAAGTGCCTCATGCAATTTCAGAGTATAATTTAATGGTTGATTGTTTGCAGAC
AGACCAGGTCATATTGGACATGCTACTAGCCTTTTGTTTTCTTATCGTTAATGTCTGCATGTGC
ATAAACAAGGCATGCTCTTTACACATTTTGTTCTGTCAAGGTGTCGTGTCATTTCTTTACACTC
GGTTAGGTGTTTTTGCATGGTGTGTATTGTCTATGTAAGGTCGATTTCTTATTTATAGCAAAAT
CAGTTTTGATGGTTATTTTTGTTGTCAAAACTCCGTCTATCTTTCACTGTGCTTCCCTCAGTTG
GAATTTTGAGTAACAAAATAGAAAGAAAAAACCCTTATAAACTAATTGGTACACCTGAATAACC
TGATTCTGGTGGGCTTACACTGAACTATTGCATTGTCTTTGCAGTGCGGTAGATCATTTTAAAA
AGCAGTTTGCATATCTTGAAGAACATTATGCTAAGGGATCAACAGCAGCTCCACCTGAGAGGCA
ACATAACTCTTTACCAAGGTAATGTTTCTATAGTTTCGTCTATATGTCTAAATTATCTTGTAAA
AAAATACGGCTTAAATTAGCAGGTAGCACTTGATCATTTGTTGACTTTCTACGATTCCGTAACA
GACCTTCTGTGTTATATTCGGATGACCGTCCACAAAACACAGCCAACATCGCCGAGGATCTTTC
AAAATGTGTACTTGGAGATAATACACAAAAAATGCATCAAGGTTCTGCTTCTGTTTGTGCGAAT
AGAGTTCCTCAAG
						
					

			
		

Sequences
Splice junction sequence	GCCAACATCGCCGAGGATCTTTCAAAATGTGTACTTGGAGATAATACACAAAAAATGCATCAAG GTTCTGCTTCTGTTTGTGCGAATAGAGTTCCTCAAGcaaatgtgtttcaccgagatcttaaacc aaaaaatattttggcaaatgctgattgtaagctcaaaatatgtgattttggccttgcaagagtt gctttcag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAAATGTGTTTCACCGAGATCTTAAACCAAAAAATATTTTGGCAAATGCTGATTGTAAGCTCAA AATATGTGATTTTGGCCTTGCAAGAGTTGCTTTCAGTGATACACCAACTGCCATCTTTTGGACG GTATATCACTTTTCCCCCAACAATTTCTTTATGTCCTCAAAGTTTCTTATAAGCATCTATTTCT TGTATTTTTAGGATTATGTTGCAACAAGGTGGTATCGTGCACCTGAACTTTGTGGATCTTTTTT CTCTAAGGTTAGTCACCTTCTTAATATGTTGTAATTTTTTTATTTAAATCATGGTATTTCCAAG AATACCCTTGTTTCCATTTCATTATTGTTGTTATATTTTTCTCTTTTACTGAAGTTAAATTCAC ACTAAAACACATGGATGATGGATGAAACTATAAAAATAAAATCCCAACTGGGCCATGGCATTCA ATTAAGTTGAGAAAAATCCTCCCAAACGTGGTGCACGACTGGTGCACTCAAACCTCCCACGGGG AGCATACTTCTTCCAGTTCCTGTGAGGGGGATTATTTTTGTGTGAAGCCCGGTTCGAACCTGGG TCAGCGGCTCTTCTACTGAAGGCTCTGCCACTCCGCTACAAGCACGTTAATTTCCTTCTTTATA TATTTCTATTAAATGATGTATTTCTTTCTCTTAATCTAAGTGCAGTAGTATTTCTAATAAAGAC CAAACACATAGATGTGCCAATCTGCTATTCTGCTATCGGTTTTGTTCTAATTATTGTGTTGCCA CTAGCTGCTTGCAAAAGTCACCAAAACGCCACTGCCATTAAATCGAATTGACATGATTAGGTCA ATTTCTATTGACCATTTATGCACATGTGCCCTTCGAAAATCATAAGAGAAAAAGGAGAATCTAA GTGTGGCCTACTGCTCTGCCAATGGATTGCAGCTTCCATGTCCATTTTGTTGGCTATGGTGTGG CAAGGGCAGAAGCTGAGGTCAAGCAGCCTGTCAGTGATTTTTTTTAATGAAATTGTTCATCTGA TTTGGGTTTTCTATTCTTGACAAACGATAGTATGTATTGGTACCATATTGTGAATTGAGCATTT GAATGAAATCCTGCAAATCAATCCAGTAAATAGGGGTGCTGATGCATTGATGGGCACCACTATC ACGTTGCATGGGAAATATATAAGAGAGATGGAGAGCATGAGAGAGATAAGAGAGGAGATGATGA TTCAGGATACCTCAGTCCTGTCAGTGGCTATGTCAGTAGGTTTATATTAAAATTTAGGATCTAG ATAAGACACATGACAAGTTTAGGAGTCCGTACGGGGAGCTAGCTGACCCATCACAACAAGTTGA AGGACAGCTAGTACATTTTACTTCTTTTAATACAATATCACCTTTTTCATTACTGACGATGTCC TGTACTCCTGTTTGTTGCTCTTGCAATGAAATGCTGTCTAGTTCCAGTTGCTGGCTATATTTTT CTTTGTACATATAATGCCTGGAGTATCGGTGAACCTTATACTGTTCAAATTCTTGCAGTACACA CCAGCAATAGATATATGGAGCATCGGTTGCATATTTGCAGAACTTTTAACAGGAAAACCTCTTT TCCCCGGGAAAAATGTGGTGCATCAACTTGATATAATTACAGATCTTTTGGGGACACCTTCTAC AGAAGCAATATCTAGGGTAAGTATGTGTCGCCATACATAAGTGTTTTATGCCGACTAATTTTCT AATGGTTGGAGTTACATGTACTCTTTATGCACTAGATTCGAAATGAGAAGGCCAGGCGATATTT GAGCAGTATGAGACGCAAAAAGCCTATACCATTTACTCAGAAGTTCCCAAATGCAGATCCACTT GCATTACGTTTGTTGGAGAGAATGCTATCTTTTGAGCCCAAAGATAGGCCAAATGCTGAAGAGG TACAACATCATCCCTTTTTATTTTATTTTTAATCATGGTAATCTAAAACAACAAAAGATAATGT ATTGTACATATTTTCAGGCTCTTGCCGATCCTTATTTCAGAAACATAGCAAATGTAGATAGAGA ACCTTCAGCACAGCCTGTGACAAAGCTGGAATTTGAGTTTGAAAGGAGGAGGATTACAAAGGAA GATATAAGGGAACTCATCTATAGAGATATTCTGGAGTATCATCCAAATATGTTGAGGGAATACC TTGAAGGGACTGAGTCAGCTGGTTTCATGTACCCTAGGTGCGATGATTTTTAACTACAACATGC TTCACCAAAGTGAAGTGCCTCATGCAATTTCAGAGTATAATTTAATGGTTGATTGTTTGCAGAC AGACCAGGTCATATTGGACATGCTACTAGCCTTTTGTTTTCTTATCGTTAATGTCTGCATGTGC ATAAACAAGGCATGCTCTTTACACATTTTGTTCTGTCAAGGTGTCGTGTCATTTCTTTACACTC GGTTAGGTGTTTTTGCATGGTGTGTATTGTCTATGTAAGGTCGATTTCTTATTTATAGCAAAAT CAGTTTTGATGGTTATTTTTGTTGTCAAAACTCCGTCTATCTTTCACTGTGCTTCCCTCAGTTG GAATTTTGAGTAACAAAATAGAAAGAAAAAACCCTTATAAACTAATTGGTACACCTGAATAACC TGATTCTGGTGGGCTTACACTGAACTATTGCATTGTCTTTGCAGTGCGGTAGATCATTTTAAAA AGCAGTTTGCATATCTTGAAGAACATTATGCTAAGGGATCAACAGCAGCTCCACCTGAGAGGCA ACATAACTCTTTACCAAGGTAATGTTTCTATAGTTTCGTCTATATGTCTAAATTATCTTGTAAA AAAATACGGCTTAAATTAGCAGGTAGCACTTGATCATTTGTTGACTTTCTACGATTCCGTAACA GACCTTCTGTGTTATATTCGGATGACCGTCCACAAAACACAGCCAACATCGCCGAGGATCTTTC AAAATGTGTACTTGGAGATAATACACAAAAAATGCATCAAGGTTCTGCTTCTGTTTGTGCGAAT AGAGTTCCTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.137380401

Conservation Information
Conserved circRNAs	NA
PMCS	0.137380401

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9477382-9476208(+)
9476466-9477683(+)
						
						Potential amino acid sequence
						
							MLRDQQQLHLRGNITLYQDLLCYIRMTVHKTQPTSPRIFQNVYLEIIHKKCIKVLLLFVRIEFL
KQMCFTEILNQKIFWQMLIVSSKYVILALQELLSVIHQLPSFGRIMLQQGGIVHLNFVDLFSLS
THQQ*(+)
MRRKKPIPFTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTK
LEFEFERRRITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYA
KGSTAAPPERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQA
NVFHRDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYT
PAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRK
KPIPFTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFE
FERRRITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGST
AAPPERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQANVFH
RDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAID
IWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRKKPIP
FTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFEFERR
RITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPP
ERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQANVFHRDLK
PKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSI
GCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRKKPIPFTQK
FPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFEFERRRITK
EDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQH
NSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQ(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9477382-9476208(+) 9476466-9477683(+)
Potential amino acid sequence	MLRDQQQLHLRGNITLYQDLLCYIRMTVHKTQPTSPRIFQNVYLEIIHKKCIKVLLLFVRIEFL KQMCFTEILNQKIFWQMLIVSSKYVILALQELLSVIHQLPSFGRIMLQQGGIVHLNFVDLFSLS THQQ*(+) MRRKKPIPFTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTK LEFEFERRRITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYA KGSTAAPPERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQA NVFHRDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYT PAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRK KPIPFTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFE FERRRITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGST AAPPERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQANVFH RDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAID IWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRKKPIP FTQKFPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFEFERR RITKEDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPP ERQHNSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQANVFHRDLK PKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSI GCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSTEAISRIRNEKARRYLSSMRRKKPIPFTQK FPNADPLALRLLERMLSFEPKDRPNAEEALADPYFRNIANVDREPSAQPVTKLEFEFERRRITK EDIRELIYRDILEYHPNMLREYLEGTESAGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQH NSLPRPSVLYSDDRPQNTANIAEDLSKCVLGDNTQKMHQGSASVCANRVPQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0271100_circ_g.3

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