Detail information of GLYMA_03G135200_circ_ig.7


General Information
CircRNA Name GLYMA_03G135200_circ_ig.7
ID in PlantcircBase gma_circ_005657
Alias gma-circRNA0336
Organism Glycine max
Position chr3: 35083781-35088604  JBrowse»
Reference genome v2.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_03G135200_circ_ig.1 GLYMA_03G135200_circ_ig.2 GLYMA_03G135200_circ_ig.3 GLYMA_03G135200_circ_ig.4 GLYMA_03G135200_circ_ig.5 GLYMA_03G135200_circ_ig.6
Support reads NA
Tissues flower bud
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTATCTAGAATTTATAGCAGAACGTCTATATATATGAAGGATATGTAATTCTAATGGATAACA
ATAAAATAGTTTCCCTTTCCTTACCTTATTCTGGAGgttctaggcctcgaatcctagactcttt
ttgtagtctacaacaacttggtgctttcattgattttcatggcaaaatcaacctgctttaactc
taacatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTAGGCCTCGAATCCTAGACTCTTTTTGTAGTCTACAACAACTTGGTGCTTTCATTGATTT
TCATGGCAAAATCAACCTGCTTTAACTCTAACATGGAGCGATTAGAGGAGTTTATGGCCAAACT
GGCTTCAAACCACCTCCCTGTCACTGAAAAGCTCGATGACTTGTTGCAACGAGTAGCTGCACTA
GAAACCACTGTCCATCATTCACCTACACCTTCTTCCTCCTCCGCCATACCTATACCAAACACAC
ACACTATTAATCCCCATAGATTGAAACTCGATGTTCCCAGATTTGATGGTTCAGTCCCCTCGGG
CTGGGTATTCAAAATCACTCAATTCTTTGAATACCATGCAACCCCAGAATCTAACAGACTGACC
ATAGCTTCTTTTTATATGGAGGGGCCGACCTTAGCATGGTTCCAGTGGATTATGCGAAATCATG
AACTCACCACCTGGCCTAGCTTTCTACAAGCTATTGAAACCCGATTTGCCCATTCACCATATAA
GGACCCTACTGGTCTTTTGTGCAAACTCACACATACGGGTTTCGTGAAAGATTACCTTAATCAA
TTTGAAGCCCTTGCCAACACGATTGTCGGATTGTTGCCCTCTTTTCTTCTGAGTTGTTTCGTCT
CCGGTCTCGACCCGAATATTTGTCGGGAGGTACAAGCACTTTAACCCTTCACTCTTGTGGATGT
CGTCGGGCTCGCCCGCCTCCAAGAGGAAAAACTCTTTGAATCCCGCAGGAACCCTCGCCTTTGA
CCACCAATTTTTCCCCACCCTTACCAGCTATTGTTCTTGCACCCACCCCCACTCTTCCCCTATT
ACCCTCACCAGCCAAGCCCCCACCCCTTCCATTAAAACGCCTTATCCCTGAAGAATTAGCAAGC
CGTAGGGAGCGCGACTTATGTTTTTATTACGACGAGAGGTTCACGAGGGGGCACCGTTGTGCCT
CGCGATTTTTCCTTCTCGTCGCAGATGAGGAACAAGGCAATGACACTCCAAGCCCTAATATAGC
CAACCTTTTCCCCAATTCTGATGACATGGTCGACCTCAAAACCCAACTTAACCCGCAACTTACC
CAACATCCACTCGAACCGCCCCAAGCCCAAATTAGTTTACATGCTTTAGCAGGCCAAACCGCCC
CAGAAACATTACGCATGGTGGGTCAGATCTTTCACCGGAACGTCGTGATCTTGGTGGACGGCGG
TAGCACGCACAATTTCGTGCAACAACGCCTGGTGAAATCCTTGGGCCTTCAAGCTGAAACCACT
CCTACCTTGTGCATGCTGGTCGGCAATGGTAATGAAGTGGAATGTTGCTTCTTATGTAGGGACC
TCAACGTGCATGTGCAGGGCCACGCCTTCACGGTGGACCTCCATGTACTTCCTTTGTGCAACAT
CGATGTCATTTTGGGCGTCCAGTGGCTCAAAGCTCTCAGACCGGTGTTAACCGATTATAATGAT
TTGACCATAAAGTTTGTTCTTAACTACAACCTAATTGAACTCAAAGGAAATTCCGACAAAGCCT
TGCTAGCAATTACCCCTCCTCAACTCCGGCGACTAACCCAAACCCATAGTGCTAGTGAATACTT
CCATATTCGCCTTTGTTCCTCAGCTTCACCCTCTCCAACCACTCATCCCGCTATCCTTACCTTG
ACCCACCAATTTTCCTCCCTTTTCCAAACACCAACTGATTTACCACCCTCACGCACCACCAACC
ACTCGATCCATCTCTCACCCTATTCATCTCTGGTTAATGTTCGCCCATACAGGTACCCTCATTT
TCAGAAACAGGAAATTGAATCCCAAGTTTCATGCATGCTCCAACACAGCATCATCAGCCCAAGC
ACCAACCCCCTTTCCTCACCAGTTTTATTAGACAAGAACCAGGATGGATCCTAGCGATTCTGCA
TGGACTACAGAGCCCTCAATTCGATCACCATCAAGGATCGCTTCCCGATTCCGACAATCGACGA
ACTGCTCGATGAACATGGCGGTGCACGTTGGTTCTCGAAACTGGATTTACTGAAAGGCTATCAC
CAAATCCTCATGGCTTCGGCAGATGTGAGCAAAACTGCATTGAGGACTCATCATGGTCACTATG
AGTTCCTGGTTATGCCCTTTGGCCTTTGTAACACACCTTCTTCATTCCAGGCCACAATGAACAC
GACCTTTGTTCCTTATTTGCGTAAATTTATCATCGTCTTTTTTTATGATATTTTAATTTACAGC
AAATCTTTCTCCGAACACCTCACACACTTGAATTTAGCTTTTCAGACACTTCGCGATTATAGCT
TCTTTCTCAAATTATCCAAATGTTCCCTTGCCACTCAACAGGTCGAATGTTTGGGTCATTTTGT
TTCGGAACGCGGGGTGGAACCTGTTCTGCCAAGGTGGAAGTTGTCCTTCAATGGCCGATACCAC
AGTCAGTCAGAGCCTTACATGGGTTTTTAGGCCTTTCGTGCTTTTACCGCCGCTTCATCCAAGG
CTATGCCACCCTGGTTGTGCCACTCACGACCCTGTTGACCAAAGATTCGTTTCAATGGTTAAAC
ACCGTTGACCAAGCTTTTCTCTGGTTGAAAGAGGCCTGTGTAAGGCTCTGGTTTTGAGACTATC
GAACTTCTCCTTGCCCTTTGTGGTAGGGACTGACGCCTCTGGAATCGGTATGGGAGCGATTTTA
TCCCAACAACATCACCCTATAGCCTATTTCAGCAAGCCTTTTTGTCCAAAGCTACTCCACGCAT
CCACCTATGTTCGAGAACTAGCGACGATCATGGCGGCAATCAAAAAGTGGCGTCAGTACCTACT
GGGCCACCAATTCACAATCCTCACAGACCACAAAAGTCTTAAGGAACTCATGGCACAAGCAATC
CAAACTCCGGAGCAACAGACATACCTCGCGCGCTTAATGGGTTATGATTATACGATTCAATATT
GCGCCAGCAAGACAAATTTGGTAGCGGATGCCTTCTCCCGACGACCGGAGATCACTTCCGGGAG
TTTTTTGATACTAACAATCCCAAATTGCATGTTTTTGCAAAACTTGAAGGCAGAGCTATCAACC
AATCTAGTGTTTCGGAGGTACCACCAGAAGATCTTTGACGAACCCTACAATCACTCCAACTGTC
TTTTCTGGCAAGATTTAATTTTGCAGAAGGGGCACATCTGGCTACTACAGGGAGCTCCGTCCAT
CTCGACTATCCTTGTCGAATTTCACTCAACACCCACCGCAGGACACATGGGGGTCATGAAGACA
TTAACACGGGTTCGCGAGAACTTTACCTGGGCAAATATGAAAAACGGCGTTCGCCAATATGTTG
CCAACTGCATTTCATGTCAACAATCAAAGTATGATCACCGACACTCTCCAGGATTATTATGTCC
TTTGCCTATTCCGACGCGGCCGTGGGAAGACCTTTCCCTAGACTTTATTGTGGGACTACCAAAC
TTTCAGGGTCATTCGACCATTCTGGTCGTTGTAGACCACTTCTCGAAAGGAGTTCATTTGGGCA
TGTTACCGACACAGTACTCAGCTTCCGGCGTGGCAAGGATGTTCATGGACATCGTCGGCAAAAT
CCACAGCATGCCTCGAAGTTTGGTTTTAGATAGGGATCCCCCTCTTTGTGAGTCATTTTTGGTA
CAAGCTAAGCGGCACGAAGCTCCGCATGGGCTCAGCATACCACCCTCAGACCGACGGACAGACA
GAGGTCATGAACCGTGTCATCGAGCAGTACCTCAGAGCCTTTGTCCATTAGAGACCATCCACAT
GGGAGCGATTCTTGATATGGGCGGAGTGGTAGTATAACACCTCTGTGCACTCTGCAACTGGAAT
GTCCCTATATGAGATAACCTTCGGCAAGAAACCTCCAAGCTTACTTCAATACCTGGAGGAAACT
TCAAATGTGGAAGCAGTTGATGAATGACTTAAGCAACGGGATCAAGTTCTTACTAGTCTAGCAA
GGAAGTTGGCAAAGGCACAACAATGAATGAAATAGTTTGCCGATAAACAACATCGTGATATGAA
TTTCGAAGTAGGAGGCTGGGTGTTGGTCAAATTACGACCCCGCCGGCAGACGACCGTCACCGGA
AGCAAATATTCTAAACTCGCGAAAAGATTCTATGATCCCTTTCAAGTTATCCAATGAATCGGGG
TAGTTGCGTACAAGCTGGAATTGCCGCCAACTTCAAAGATTCATCCAGTGTTCCATTGTTGCTT
ATTAAAACCATTCCAATTTCAATCCACCACAACAGACCCTAGCCTGGAGTTGCCAGCTTTATTA
GAGGATAATCAACCCCTCACAATCCTCGACACAAAATGGGAACAGACAGCTTCGGGAAGACAAT
TACTTGTCCTAGTTCAATGGACAGGATTACTTCCAGAAGACACTTCATGGGAGAAGTGGGAGAA
CCTTAAAAAGGATTACAACCTTGAGGACAAGGTTGTTTTGGAAGCTCGGAGGGATGTTATGAAT
GAAGACACAGAGCAAGATGCAACAACAGAGCATGAGGCAGAAGCAAGAGAAGAAGGTCAAAAAG
GGAAATTAGTAAGCCCCAGTACCTTAAGGATTATGCAACAAAATGAGGCTAAGCTGGCAATGAT
CTTCTAGAAGCAGAATCCACGAATCCTCTGTGTCGTTGTGCCATTACAGGTTGTCTCCATGGTA
GCGCAATATTCAAATTCCTCCAAGACATACAATGCCAAAATCTGTTAGAATTTGTATCTAGAAT
TTATAGCAGAACGTCTATATATATGAAGGATATGTAATTCTAATGGATAACAATAAAATAGTTT
CCCTTTCCTTACCTTATTCTGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.009051949
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs gma-miR395h
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description cytoplasmic male sterility
Other Information
References Chen et al., 2018