Detail information of AT3G25690_circ_g.6


General Information
CircRNA Name AT3G25690_circ_g.6
ID in PlantcircBase ath_circ_023803
Alias At_ciR3233
Organism Arabidpsis thaliana
Position chr3: 9355223-9356611  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT3G25690
Parent gene annotation Hydroxyproline-rich glycoprotein family protein
Parent gene strand +
Alternative splicing AT3G25690_circ_g.7 AT3G25690_circ_g.8 AT3G25690_circ_g.9
Support reads 2/34
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G25690.6:1
AT3G25690.5:1
AT3G25690.3:1
AT3G25690.2:1
AT3G25690.1:1
AT3G25690.4:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAACAATATGATT
GGGGAAATCGAGAACCGATCAACATTCCTCTTAGCAagcgataaagtggcgaaagttagagaag
aggttaacaatttgaagcataacaatgaggatttgttaaagcaagtggaagggcttcaaatgaa
taggttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1389
Transcript exons: 9355223-9356611
AGCGATAAAGTGGCGAAAGTTAGAGAAGAGGTTAACAATTTGAAGCATAACAATGAGGATTTGT
TAAAGCAAGTGGAAGGGCTTCAAATGAATAGGTTTAGTGAAGTTGAGGAATTGGTTTATCTACG
TTGGGTCAATGCATGTTTACGGTATGAGTTAAGAAACTACCAGACACCAGCTGGTAAAATCTCA
GCTCGTGACTTAAGCAAGAACCTAAGCCCCAAGTCCCAAGCAAAAGCAAAACGGTTAATGTTAG
AGTATGCTGGTTCAGAGCGTGGCCAAGGAGATACCGACTTAGAAAGCAACTATTCTCAACCTTC
ATCTCCGGGAAGCGATGATTTCGATAATGCTTCAATGGATAGTTCCACAAGTAGGTTTAGTAGT
TTTAGCAAGAAGCCAGGATTGATTCAGAAACTTAAGAAATGGGGCAAAAGCAAGGATGATTCAA
GCGTTCAATCATCGCCTTCAAGATCATTTTACGGAGGATCACCGGGAAGACTTAGCTCGAGTAT
GAATAAACAGAGAGGTCCTTTAGAATCTTTGATGATTAGAAACGCTGGTGAATCCGTAGCCATA
ACAACATTTGGTCAAGTGGATCAAGAATCTCCTGGTACCCCTGAAACACCGAATCTTCCAAGAA
TCAGAACACAACAACAAGCTTCTTCTCCGGGTGAGGGTTTGAATTCCGTTGCAGCATCGTTCCA
CGTGATGTCTAAATCGGTTGACAATGTTTTGGATGAGAAGTATCCTGCGTACAAAGACAGGCAT
AAGTTGGCAGTTGAAAGAGAGAAGCACATTAAGCATAAAGCAGATCAAGCAAGAGCAGAGAGAT
TTGGCGGTAATGTGGCTTTGCCTCCTAAACTTGCTCAACTAAAGGAGAAAAGGGTTGTTGTTCC
CTCTGTGATCACAGCCACAGGTGATCAGTCTAACGAGTCAAATGAATCTAACGAAGGTAAAGCC
AGCGAAAACGCTGCAACCGTAACCAAAATGAAGCTTGTAGACATTGAGAAACGACCTCCTAGAG
TACCTCGCCCGCCTCCAAGATCAGCTGGAGGTGGTAAAAGTACTAACTTGCCTTCAGCAAGACC
TCCTTTACCTGGTGGTGGTCCACCACCACCTCCTCCACCACCTGGCGGTGGACCGCCTCCTCCA
CCTGGCGGTGGACCACCTCCACCACCACCTCCTCCTGGAGCACTTGGAAGAGGAGCGGGAGGCG
GGAACAAAGTTCACCGAGCTCCTGAGCTTGTTGAGTTTTATCAATCATTGATGAAACGTGAATC
GAAGAAAGAAGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAAC
AATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCA

Genomic sequence AGCGATAAAGTGGCGAAAGTTAGAGAAGAGGTTAACAATTTGAAGCATAACAATGAGGATTTGT
TAAAGCAAGTGGAAGGGCTTCAAATGAATAGGTTTAGTGAAGTTGAGGAATTGGTTTATCTACG
TTGGGTCAATGCATGTTTACGGTATGAGTTAAGAAACTACCAGACACCAGCTGGTAAAATCTCA
GCTCGTGACTTAAGCAAGAACCTAAGCCCCAAGTCCCAAGCAAAAGCAAAACGGTTAATGTTAG
AGTATGCTGGTTCAGAGCGTGGCCAAGGAGATACCGACTTAGAAAGCAACTATTCTCAACCTTC
ATCTCCGGGAAGCGATGATTTCGATAATGCTTCAATGGATAGTTCCACAAGTAGGTTTAGTAGT
TTTAGCAAGAAGCCAGGATTGATTCAGAAACTTAAGAAATGGGGCAAAAGCAAGGATGATTCAA
GCGTTCAATCATCGCCTTCAAGATCATTTTACGGAGGATCACCGGGAAGACTTAGCTCGAGTAT
GAATAAACAGAGAGGTCCTTTAGAATCTTTGATGATTAGAAACGCTGGTGAATCCGTAGCCATA
ACAACATTTGGTCAAGTGGATCAAGAATCTCCTGGTACCCCTGAAACACCGAATCTTCCAAGAA
TCAGAACACAACAACAAGCTTCTTCTCCGGGTGAGGGTTTGAATTCCGTTGCAGCATCGTTCCA
CGTGATGTCTAAATCGGTTGACAATGTTTTGGATGAGAAGTATCCTGCGTACAAAGACAGGCAT
AAGTTGGCAGTTGAAAGAGAGAAGCACATTAAGCATAAAGCAGATCAAGCAAGAGCAGAGAGAT
TTGGCGGTAATGTGGCTTTGCCTCCTAAACTTGCTCAACTAAAGGAGAAAAGGGTTGTTGTTCC
CTCTGTGATCACAGCCACAGGTGATCAGTCTAACGAGTCAAATGAATCTAACGAAGGTAAAGCC
AGCGAAAACGCTGCAACCGTAACCAAAATGAAGCTTGTAGACATTGAGAAACGACCTCCTAGAG
TACCTCGCCCGCCTCCAAGATCAGCTGGAGGTGGTAAAAGTACTAACTTGCCTTCAGCAAGACC
TCCTTTACCTGGTGGTGGTCCACCACCACCTCCTCCACCACCTGGCGGTGGACCGCCTCCTCCA
CCTGGCGGTGGACCACCTCCACCACCACCTCCTCCTGGAGCACTTGGAAGAGGAGCGGGAGGCG
GGAACAAAGTTCACCGAGCTCCTGAGCTTGTTGAGTTTTATCAATCATTGATGAAACGTGAATC
GAAGAAAGAAGGTGCACCTTCTTTGATCTCTTCAGGAACTGGTAATTCTTCAGCAGCTAGGAAC
AATATGATTGGGGAAATCGAGAACCGATCAACATTCCTCTTAGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.241861477
Functional Information
Coding potential Y
Potential coding position 9355310-9356608(+)
Potential amino acid sequence MNRFSEVEELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERG
QGDTDLESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSR
SFYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQESPGTPETPNLPRIRTQQQAS
SPGEGLNSVAASFHVMSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGNVALP
PKLAQLKEKRVVVPSVITATGDQSNESNESNEGKASENAATVTKMKLVDIEKRPPRVPRPPPRS
AGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAP
ELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLASDKVAKVREEVNNL
KHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQA
KAKRLMLEYAGSERGQGDTDLESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKW
GKSKDDSSVQSSPSRSFYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVDQESPGTP
ETPNLPRIRTQQQASSPGEGLNSVAASFHVMSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKA
DQARAERFGGNVALPPKLAQLKEKRVVVPSVITATGDQSNESNESNEGKASENAATVTKMKLVD
IEKRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGA
LGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLL
ASDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKI
SARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDLESNYSQPSSPGSDDFDNASMDSSTSRFS
SFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRLSSSMNKQRGPLESLMIRNAGESVA
ITTFGQVDQESPGTPETPNLPRIRTQQQASSPGEGLNSVAASFHVMSKSVDNVLDEKYPAYKDR
HKLAVEREKHIKHKADQARAERFGGNVALPPKLAQLKEKRVVVPSVITATGDQSNESNESNEGK
ASENAATVTKMKLVDIEKRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPP
PPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAAR
NNMIGEIENRSTFLLASDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNAC
LRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGDTDLESNYSQPSSPGSD
DFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRLSSSMNKQRG
PLESLMIRNAGESVAITTFGQVDQESPGTPETPNLPRIRTQQQASSPGEGLNSVAASFHVMSKS
VDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGNVALPPKLAQLKEKRVVVPSVITA
TGDQSNESNESNEGKASENAATVTKMKLVDIEKRPPRVPRPPPRSAGGGKSTNLPSARPPLPGG
GPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGA
PSLISSGTGNSSAARNNMIGEIENRSTFLLA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017