Detail information of Os01g0550300_circ_g.8


General Information
CircRNA Name Os01g0550300_circ_g.8
ID in PlantcircBase osa_circ_002148
Alias NA
Organism Oryza sativa
Position chr1: 20601289-20601543  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0550300
Parent gene annotation Similar to Gda-1 protein. (Os01t0550300-01);Similar to N-rich pr
otein. (Os01t0550300-02)
Parent gene strand -
Alternative splicing Os01g0550300_circ_g.2 Os01g0550300_circ_g.3 Os01g0550300_circ_g.4 Os01g0550300_circ_g.5 Os01g0550300_circ_g.6 Os01g0550300_circ_g.7 Os01g0550300_circ_g.9 Os01g0550300_circ_g.10 Os01g0550300_circ_g.11 Os01g0550300_circ_g.12 Os01g0550300_circ_g.13 Os01g0550300_circ_g.14 Os01g0550300_circ_g.15 Os01g0550300_circ_g.16
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GG
Number of exons covered Os01t0550300-01:2
Os01t0550300-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCGAATTTATAGGTTGGTTATGCTTACCGAAGAGCTGCCTCTTGAGGTTTTCCTCCATGGT
GTCGTTGTTGCAGACGAAGATGTAGCCGCCGATGGCggcagccctggcctgatcgccctcactg
aatccctgtatctcgatggaagccctgcatcaagcacgatttgttcatgagaaacttaatttta
tgggacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAGCCCTGGCCTGATCGCCCTCACTGAATCCCTGTATCTCGATGGAAGCCCTGCATCAAGCA
CGATTTGTTCATGAGAAACTTAATTTTATGGGACATAATTTCTTGGTTCAAGAATAATTAGGGT
TCAAGTACCAATTCTTGGATGGTTTTATCATCGAATTTATAGGTTGGTTATGCTTACCGAAGAG
CTGCCTCTTGAGGTTTTCCTCCATGGTGTCGTTGTTGCAGACGAAGATGTAGCCGCCGATGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.194445425
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017