Plant Circular RNA Database

Detail information of Os02g0795300_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os02g0795300_circ_g.5
					
						ID in PlantcircBase
						osa_circ_016934
					
						Alias
						Os02circ28932
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 33810368-33811021  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, SMALT, Segemehl
					
						Parent gene
						
							Os02g0795300						
					
						Parent gene annotation
						
							Similar to protein binding / zinc ion binding. (Os02t0795300-01)
;Similar to protein binding / zinc ion binding. (Os02t0795300-02
)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0795300_circ_g.3 Os02g0795300_circ_g.4 						
					
						Support reads
						2/13
					
						Tissues
						leaf and panicle/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0795300-02:2
Os02t0795300-01:2

General Information
CircRNA Name	Os02g0795300_circ_g.5
ID in PlantcircBase	osa_circ_016934
Alias	Os02circ28932
Organism	Oryza sativa
Position	chr2: 33810368-33811021 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, SMALT, Segemehl
Parent gene	Os02g0795300
Parent gene annotation	Similar to protein binding / zinc ion binding. (Os02t0795300-01) ;Similar to protein binding / zinc ion binding. (Os02t0795300-02 )
Parent gene strand	-
Alternative splicing	Os02g0795300_circ_g.3 Os02g0795300_circ_g.4
Support reads	2/13
Tissues	leaf and panicle/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0795300-02:2 Os02t0795300-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTGTCTGATTTTACGGGGCATGTGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAGAGC
TCATAATCGGTTGGTCTTAGGTGGATTATTATTTACcctcatcgcttgctggaccagaaaagct
cctctctccatggagacatgctcgtaaatgaccttggtcttgtcacttgcggcttcaccatcgc
ctgcagca

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 551
Transcript exons: 33810368-33810596,33810700-33811021
CCTCATCGCTTGCTGGACCAGAAAAGCTCCTCTCTCCATGGAGACATGCTCGTAAATGACCTTG
GTCTTGTCACTTGCGGCTTCACCATCGCCTGCAGCATGTGATCTCTTGATTCGGGCATGGCCAT
CAATGAAGCGGTCGACAAGGCCTTGAAGCTCATCATCAGGCTCGATCCCTTGGATGTCAGCACC
ACACAATGGACAGTCCTTAAAGCGCAATATGCATGCCTTGCAGAACTTGTGCGAGCACGGGGTG
CATTTGCTGCTTTGATGTAGCAGAGCGTGGCAGACCACGCAGCTGAGTGGGCCAAGCTTGAAGG
TGTTGTTGGAGTCATAGCCAAAGGGGCACTTTGCTGGCACCACACGAGGATCGGTGTTAGCATT
GCCAGTTTTTTCATTATCGTCGTCGTCGGTGTGATTGTTGGCTGTGACAGGACATGAGGTGGTT
TTGTTGTCTGATTTTACGGGGCATGTGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAG
AGCTCATAATCGGTTGGTCTTAGGTGGATTATTATTTAC
						
						Genomic sequence
						
							CCTCATCGCTTGCTGGACCAGAAAAGCTCCTCTCTCCATGGAGACATGCTCGTAAATGACCTTG
GTCTTGTCACTTGCGGCTTCACCATCGCCTGCAGCATGTGATCTCTTGATTCGGGCATGGCCAT
CAATGAAGCGGTCGACAAGGCCTTGAAGCTCATCATCAGGCTCGATCCCTTGGATGTCAGCACC
ACACAATGGACAGTCCTTAAAGCGCAATATGCATGCCCTGAGAAGGAAATCCAGTGTTTTGGAG
AAAGACAAGGAGATCAAGTGAGAAGGTACATATATTGACAGAACGAATTAGAAAGCTATTGAAA
TATGATACGCACTTGCAGAACTTGTGCGAGCACGGGGTGCATTTGCTGCTTTGATGTAGCAGAG
CGTGGCAGACCACGCAGCTGAGTGGGCCAAGCTTGAAGGTGTTGTTGGAGTCATAGCCAAAGGG
GCACTTTGCTGGCACCACACGAGGATCGGTGTTAGCATTGCCAGTTTTTTCATTATCGTCGTCG
TCGGTGTGATTGTTGGCTGTGACAGGACATGAGGTGGTTTTGTTGTCTGATTTTACGGGGCATG
TGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAGAGCTCATAATCGGTTGGTCTTAGGT
GGATTATTATTTAC

Sequences
Splice junction sequence	TTGTCTGATTTTACGGGGCATGTGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAGAGC TCATAATCGGTTGGTCTTAGGTGGATTATTATTTACcctcatcgcttgctggaccagaaaagct cctctctccatggagacatgctcgtaaatgaccttggtcttgtcacttgcggcttcaccatcgc ctgcagca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 551 Transcript exons: 33810368-33810596,33810700-33811021 CCTCATCGCTTGCTGGACCAGAAAAGCTCCTCTCTCCATGGAGACATGCTCGTAAATGACCTTG GTCTTGTCACTTGCGGCTTCACCATCGCCTGCAGCATGTGATCTCTTGATTCGGGCATGGCCAT CAATGAAGCGGTCGACAAGGCCTTGAAGCTCATCATCAGGCTCGATCCCTTGGATGTCAGCACC ACACAATGGACAGTCCTTAAAGCGCAATATGCATGCCTTGCAGAACTTGTGCGAGCACGGGGTG CATTTGCTGCTTTGATGTAGCAGAGCGTGGCAGACCACGCAGCTGAGTGGGCCAAGCTTGAAGG TGTTGTTGGAGTCATAGCCAAAGGGGCACTTTGCTGGCACCACACGAGGATCGGTGTTAGCATT GCCAGTTTTTTCATTATCGTCGTCGTCGGTGTGATTGTTGGCTGTGACAGGACATGAGGTGGTT TTGTTGTCTGATTTTACGGGGCATGTGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAG AGCTCATAATCGGTTGGTCTTAGGTGGATTATTATTTAC
Genomic sequence	CCTCATCGCTTGCTGGACCAGAAAAGCTCCTCTCTCCATGGAGACATGCTCGTAAATGACCTTG GTCTTGTCACTTGCGGCTTCACCATCGCCTGCAGCATGTGATCTCTTGATTCGGGCATGGCCAT CAATGAAGCGGTCGACAAGGCCTTGAAGCTCATCATCAGGCTCGATCCCTTGGATGTCAGCACC ACACAATGGACAGTCCTTAAAGCGCAATATGCATGCCCTGAGAAGGAAATCCAGTGTTTTGGAG AAAGACAAGGAGATCAAGTGAGAAGGTACATATATTGACAGAACGAATTAGAAAGCTATTGAAA TATGATACGCACTTGCAGAACTTGTGCGAGCACGGGGTGCATTTGCTGCTTTGATGTAGCAGAG CGTGGCAGACCACGCAGCTGAGTGGGCCAAGCTTGAAGGTGTTGTTGGAGTCATAGCCAAAGGG GCACTTTGCTGGCACCACACGAGGATCGGTGTTAGCATTGCCAGTTTTTTCATTATCGTCGTCG TCGGTGTGATTGTTGGCTGTGACAGGACATGAGGTGGTTTTGTTGTCTGATTTTACGGGGCATG TGGCGCCAGCAGAGGCGAGTTTGGCAAACGGGCATAGAGAGCTCATAATCGGTTGGTCTTAGGT GGATTATTATTTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004373* 						
					
						PMCS
						0.483782245

Conservation Information
Conserved circRNAs	osi_circ_004373*
PMCS	0.483782245

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33810991-33810988(-)
						
						Potential amino acid sequence
						
							MSSLCPFAKLASAGATCPVKSDNKTTSCPVTANNHTDDDDNEKTGNANTDPRVVPAKCPFGYDS
NNTFKLGPLSCVVCHALLHQSSKCTPCSHKFCKACILRFKDCPLCGADIQGIEPDDELQGLVDR
FIDGHARIKRSHAAGDGEAASDKTKVIYEHVSMERGAFLVQQAMRVNNNPPKTNRL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	33810991-33810988(-)
Potential amino acid sequence	MSSLCPFAKLASAGATCPVKSDNKTTSCPVTANNHTDDDDNEKTGNANTDPRVVPAKCPFGYDS NNTFKLGPLSCVVCHALLHQSSKCTPCSHKFCKACILRFKDCPLCGADIQGIEPDDELQGLVDR FIDGHARIKRSHAAGDGEAASDKTKVIYEHVSMERGAFLVQQAMRVNNNPPKTNRL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0795300_circ_g.5

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