Detail information of Os01g0924600_circ_igg.1


General Information
CircRNA Name Os01g0924600_circ_igg.1
ID in PlantcircBase osa_circ_005581
Alias NA
Organism Oryza sativa
Position chr1: 40484586-40489462  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0924600_circ_ig.1 Os01g0924600_circ_ig.2 Os01g0924600_circ_ig.3 Os01g0924600_circ_ig.4 Os01g0924600_circ_ig.5 Os01g0924600_circ_ig.6 Os01g0924600_circ_ig.7 Os01g0924600_circ_ig.8 Os01g0924600_circ_ig.9
Support reads 1
Tissues shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGGGGTGTGTGTAGAAGGGCCCCGACCTTTGGATTCGTCGACGAAACCTATTGCGGCGGCGG
CGGCCATGTCGTCGTCGATCCCCAGCGAGAGCACATcagttgctaccagcttcttcagcaaagt
tagtgtcatcccctaccaagctcgcgcttgaaccctgcctttttcctcttggtacctcattggc
aagtccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTTGCTACCAGCTTCTTCAGCAAAGTTAGTGTCATCCCCTACCAAGCTCGCGCTTGAACCCT
GCCTTTTTCCTCTTGGTACCTCATTGGCAAGTCCAACCAATTGATTACCTGATGCACCACCCCC
CATAATACCTGAAAAATCACCCCTTTGCATATCAAGCATTGATCCTGAGCTTGATCTCAGGCCC
AACTTTCCACTGTTCTCAATACTGCTAGTCAAACTCTCCAAATTTGCTGCTCCCTCTTGTCCTG
CCTGCCCAGCTTTAGCAAAAAGGGACCTTTCTGCAAGAGGATCATCAAAAGACAACCTGTCCGC
AGGTGATCTTAAAGGGTTATCTGCAGCAGGCTGTGCAAAGAGCGATGAAGGGTCTTTACGTCCA
AAGGATGCCGGTACTGGAACATCAGGATAACCACGAGATTGTTGTGACTGAACTAGTTTTTGAT
GGAACAAGTCGCTCAAATCTTGCTCTGTGCTCCTCTCGTTGTTCCTAAGTGATGCCCATGCATG
TGAATTGTCAACGGCAAGGTTCATTTCCACATTCCTTCGCTGTTTCTGTGCTTCCATTTGCATC
TGGCTGATGCGTGAAGGTTCCATAAGTGTGTTTTGCAACTGTCCATTGGCATCTGACCAGTGCC
TATCCAGCCTTGCCAAGTTACCAGAAAGCTGTTCCTGAAGCCTGTGTTGCTGCGGATGAACCCC
TGAAGGAACCATAGGCATTTGTCCTAGAGAATACAAATCTCCATGTGTTTCTAACTGACCAATG
CCATGATGGCGTGCTAGGGAATTTACAACATCCAGGTTAGGTAGAGGAGCGCCACCAGGCAAAG
AGCCAGATCTCTCAAGGGAGTGGATACCTTGACCTCCTCTATGCAACCGCTCATGCAAAGACAA
GCTCCGCTCGAGATGTTCATGCTGCTCCACCGATGAGGATCTCTGAAGGGACTGCAGAAGATCA
AAATGTCCTAGTCTAGAGGCATGGCCTTGGTTCGGACTAGTTCCTGAGCGGATAAAATGACCCG
ATTCATCCATTGGCCAACCCCCGCTCAAATGTCTTTCTTCCTCTCTGCCTGCATGTTGACGAAG
AGCGTTTGCCAATTGTTGTGACTGGAGCTGATCATGGTGAAGACCTAACAGAATTTGTTGCTCT
AAAGGAAGCATTTGCCTCTGATTTGAACGTGAGAGAACATCCATCAGATCATTGTGATGCTCCC
TATGGATACCTTGCCCAAATTTTGCTTGAATGAGTTGCTCAATCGCTGCATCATGCTGCCTTTG
CAAATGGTGGGGCTGGTGATGCAGGTCATTCAATACATGTTCCCGAAGTAATACTTGATCAACC
ATGTTAGTTGGTCCAAAATTTGAAGCTTGCAACTGTTGCTGCAACATTTGCTCTAGAATCAGCT
GTTGCTGTTGCTGTTGTTGCTGTTGCTGCTGCTGTTGAAGAAGCTGCTGGGCTTGACGCTGCTG
CAGTTGCCTCTGGTGCTGCTCTTGCTGGAGCTGTTGGCGGCGTTGCTGTTGCTCAAGCTCAAAC
TGGACTCTCAAAAGATGCTCCACCTCAGGAACCGGTTGATTCATAGACTGCCTGTGTTGGTGCA
AAGAATCAAACACCTGTCCTGGAAATGGTCCAGGAAACTCCAGATTGTTCCGAGCCATCAACTG
CTCCTGCTGCCGTTGCTCCCTCCGGATCTGTTGGAGAAGCATTTGCTCCTCCATATTCAAATGA
TTCAAGTCAGGTTCAAGCTGGGGAAGTCGACCTGAAATGTTTGTGTCAGTCACATTGTCCAGAC
GCCCAAAGTTGGCAGGCCACTCGTCTCGAACAACAGGAGCTTCATTCATCCTGCCAAGCTGCCC
ATGCCTCATGCTCACAGGCGGAATGTCCTTAGGGGCTGCAGGCTTGGGATTTCTTCGCTCATTT
ACACCGAGTACGTTAGATGAGAGAGGTTGCTTCGGGTGCATTCCTTCTAACTCAGACCAAAGCA
AGCCAAGAGGACTGAGCTCACTCTCTCGGGGAACATCATGCTGGGGCAAATTAGCTTCTCCCAT
TGCAGCACGGTGATCACGTGATCCCAACTGGAAATCTGAACGGTCATTTTCAAGATCCCGTAGA
GACTGACCAGTGCTGCTGTTAGGCCTCGCTGTGTACAAAATTTCTGCGGTAAGTAGAAATAAAA
AAAAATGAGCATTTACTGCAAATTGGAAACAAAGGACTGAGAGATGATTGTGAATATAAGGCCT
CAAAAACCAAGGAAACTAACCTTCAGCATCCAGACTCACTGATTCAGGAATGTGCTGCTGGCGG
ATATCAACATTAGATGCGGTCTTTTCTGTTTCATGTGAAGGGAGCCAACTCATATGTGACTGAA
CAGCTGCTTCCTGCTCACCTCTTTTAAGATCAAGAACATAACTTTCAGAATCCCGTTTAGATGT
TTGATCATTCTTCCCAAAAGAACCAGAAGCAGGAACCTTGTCATCAAAACTATTATGTACAGAG
TCTGGAGATTCACTAGTTTCACCATGGGATACAGGTGGGAGAGGTTGGGGCTTTTGTCCAAGGT
GTGGCATTACTTCAAAAAGTGGCCGGAAAGGAGAATCGTCTGGAGAATTAGCCAAACGCACTGG
TAACTCCAAACCAAAATATCCATCTTCGTACCAAGAGATTATGTCAGCACCTAGGAATGGACCC
TGCATGCCCCCTTGGGGATCCAAATAAAACAGAGTTAAGTCCTCTGGATAGCTAGCCTGGCCAC
TAGCTTTTGTATCCATGTCATTATTTTGGTACAGCACAGGAGGTTGTTGAATATGCTCAAAGGG
TGATTCAAGAAACAGAGAGCTTGAGTCGTTGGGTAGCTTTACACCAAGATCAAGATCAGCACTT
GAGTTGACTTCATTAATTTTCGCATCTTCCCGTATGCCAGAAAGCCCAAATTCATTTTGTTCCA
TAGTAAGGTCCTTTGACGGAAATGTAATACCAGCAGAGATTACCCCTCCGTCATAGAAGGCATC
CTTCTCTGAGATTAAAGTGGATGATTCTTCCTGACCCAATCCACTAAAAGCAACAGAGCTTGTA
TCCTTCTTGCCATCAATACCAGAAGCCAATCCTGAAATATAGTTAGCTTCAGAAGACGCCCAGA
AAGAAAAGAACCCTTGTGACGGTAGCTCATGCATTTTTTAGATCTACAAAAATAATAGCCACAA
TGCTGCTTGCAGCTTCGTATGGTGTACATACCTTCAAGCTCTTTTTTCCTATCTCTTTGCATTC
CAGTTGTATTGGCTACTTCACTGCTGATGACCTTACCCTTCATAATATCTTCCCTAACAGCCTA
CAAAATGAATAGGCAGATAAATATGCATATGAACAGAGTTGAATATTCAACGAAAAGTAAGGCA
TTTATCAACAAAATGTTACCTCCTCATCAGTATCAGGTGCAACAAAGGCCAGAGGTTTCACAGG
AGAAGATAGTACGACAGAAGGAACTTCCTCCAGCTTACAGTGTACGTCATCAAAGGATGGCATT
GCCTTTTGTTGCCTGTATATATCAAGAAGTTTGCCCCGTGGGTAGCAAAAGGTAACAGCAGATG
ATGCACATTTTCCATGTGTAGCAGGAGCACCAATTGGTCCAGCAGAAGATGGCCGGGTGAAGGA
TGGGATGGAGTTGGGGTTTGCCCTGCCTCTTCCAGCGGAAAAACCAACATTGGACTCCTTCGCA
CGTCCTTTCTCCAATCCAAATCCCGGAGCAGCGCGGTACGTTCCTGTTCCAGCTGAGTGACTTT
CCTGCCGGTGACGAGGTCTCCATTTGTCACGAGAGTCTGTCTCAGTCAGCAGCCTTCCAGTAAA
TGTCTGTTTTTCAGCATGGCTTTCATCCTTCTCCGCATCAAGCTTCTTTTCCGATCTGGAGTCC
TTCTCCTTGTCATCAGGCCCCCATCTTGATGACCATTTGCCATCACGCCGCCCTTCATTCCCTG
AACCACGGGTGGATCCATCGTTCCACCTTTCAGATGGGGGTGCTCGTGAATCACCTCCATCCCT
CACAGAAACATTATCAGATCGGCGATCATTTTTACGGCTCTCCATATCGCGGTCCACTTCCTTC
TTGCGCTCCCTCCTCCCAGGTAGGCTTGTTTCCCTCTCCTCTTCTAGCCAACGAAGGCTACTGT
CAGCATCAAATACATTCCGCCTGCGTTCTTTCTTGTCGGCAGCTCCTTCCGGCATCCTTACTTC
TTTTTCAGAAGGGTCAAGCAAGGAACCATGACCCAAAATCTGCAAACAAGCATCGTGCATCATT
AATGACCGTTTCTAGCAGCAAGCGATAAACAATAAATCAATATACAGTCCCAGATAAACTTATG
AGTTGTGACCAAAGTAGAAAAGCCATATACAGAGTCTGAATTGAAACATGGTCAGGAGAGCATC
ACAAACCTTTGCATCAGTTGGTTTAGCATAAAGCCACTGAGGAGACAGAGGAATGCTGTTATCC
AGGTGCTGCTGATCTGCATAGCCAAAAGATTTTCCAGGGTCAACGACTTAGCAAAAGCGTGCTA
TCTCACACAAAAGGATGCCCTGCTCACGCACAAACCCCACTCTCACTCCCACCAGCAAGCAAGC
AAGCGTCCGCTCACACACCACACAAGCAGGCACAGGACGCGCACGCACGAGCACACGTGCACAC
ACACACGCATGAACAGTATACCCAATCCAAAACCAAATCATACATGAAGCTATATGCTACAATT
CCCTCGACGACTAAGGAAGAAAAAAAATAACGAACGATGCGATGGGGGTGTGTGTAGAAGGGCC
CCGACCTTTGGATTCGTCGACGAAACCTATTGCGGCGGCGGCGGCCATGTCGTCGTCGATCCCC
AGCGAGAGCACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.28329824
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017