Detail information of BGIOSGA011389_circ_g.6


General Information
CircRNA Name BGIOSGA011389_circ_g.6
ID in PlantcircBase osi_circ_013886
Alias Chr03:3524515_3526415(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 3990604-3992504  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA011389
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011389_circ_g.5 BGIOSGA011389_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA011389-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACATTTCCAGGAGTTGGTTCATGCCCATTCCAAAAGACATAGGTCTGGATCACATCCAAGCC
TCCATCTTTAGCCTTCTCAATTAGCCCGTCCCACATccatattcatcaagtggagcatcataat
catagctcgtggtgataaagggacctccagccgtgcgaccaaaattcgttcctccatgatactt
ttacagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATATTCATCAAGTGGAGCATCATAATCATAGCTCGTGGTGATAAAGGGACCTCCAGCCGTGC
GACCAAAATTCGTTCCTCCATGATACTTTTACAGTTGAGGGAAAATCAATTAACCAACAAGAAT
GAGTATCACCCTTTAGGAAGCTTAAAGAAAACATAAGTGAGCCTCTATCTGTCATACCATGTAG
TAGTTGATAAAAGAACCACCCTTCTGTACGAAGCGAGCAACACCAAATGCGAGATCTTCAACTG
GTCGTTGACGGATGGTTCCTCCGAATTCAGTAAACCTGAATTATTTTGCATATTGGAGCAATTA
TACTACCACTATGAATCAACAGAATCAAATTATATAAACATGAACCACATCAATGGAAGTACTG
GGATTGTGCTTGCAACACTAGATATTGGTTCCTTGGGGAAAAAAAATTACCATCCACTCCAAGC
TTCAGTCCACATCGTAGGCTTGTAAGGCTTGTTAGGAGAAAATGTGTCACAATAGAAACCATTG
CATGCATTGATCTGTTTAAAGAACAGAGGTTAAATGTAATTTCAATAATTTGTTCGTACAGAAG
TCATGAGATATTTGTATATTCCACGACTGAAATTTCACAAGATCAAAATCAATGTGGTTGGCGT
CAATTTTTCTTCTTCTAATATATGTTTGATATATGAGTAGGCGACAAATATGCTCATACATATG
CTAGAAACCTAGAACACCAATCATGACCTCTTATGGAGATAACCCACTGAACTCGCAAAAATAC
GAATCAGCATGTCCTGTATCGTTGTATAATTGTATTAACATGTTCGGTATAGTTTCACAATTTA
CACCTGATGGTGGTAGTATTTGACAGAGGATAAGATCATCATACCACTGGGTCAGGTGCGTCAT
CCTCCTTGCACATCACCCACGGCACACCGGTGTCCAATCCCACGGCCATCTTTGCCGCCCAGTT
GATATATGCCTTGCCGGCAGCCCCAAACTCTTTACCTTCTGGCCCATACTCGTTCTCAATCTGT
GTCCAAATAATAACACCCACCGCACCATGAGCAACCCAGGAAAATGTGCAGGCTAAGATGAATC
GTGCAAACAACACATTACTCAACCACTACTACGTACTAACCCAATGTTATACAATGTGCTTGCA
TCCATATACATGACATGGTTGAGGCCCTCTCTCTAAAAAAAATATACATGACATGGGAAGCAAA
GTTTTGCACTTGCCTGAGAGAGGATAATAGGACCGCCTTGTGAAGCAAAGAGGTTTTCACTCTT
CATCATGCCCACAATTTTCTCTGTGAACCCCTGCATTGCATTCTGCAAAGCAAAACTCAAGTCA
GAAACACATATGAACAAGATTTACACCTCTGGTAAGATCCAGAAATGCTGAAATACTTCCACAA
ACCTTGAAAGGTTCATTGTCCGTCCTGAAGCTGATGCCTGGTACATACTTCAACCAAACTGGAA
ATCCACTGCAAATTTACATGGCAACAGAAGTCATGAAACGAAAGTAAAATATGGACATACAAGG
AACAGAAAATGGTGAAAAAAAAGAACATTTGTGTGTTTTTACTACGGTCAAATTAAGGCTTGAG
GAATACCCAAAATTCCACTCTCCACAAATGTAGGGACCGATGCGGAGATGAACAAACATGCCAG
CCTTCTGGACAGTCTTGATGAACCTGACCAGATCGTACCTCCCTTCAAAATTGTACTGCACGAA
GCCAGCAAAAACCATTGAAATCCCTGATGTGCCATTACACTGTTAAAAAATGGGGTTAATAATG
AAAGAGAGAGTACATTTCCAGGAGTTGGTTCATGCCCATTCCAAAAGACATAGGTCTGGATCAC
ATCCAAGCCTCCATCTTTAGCCTTCTCAATTAGCCCGTCCCACAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021