Detail information of BGIOSGA014543_circ_g.1


General Information
CircRNA Name BGIOSGA014543_circ_g.1
ID in PlantcircBase osi_circ_014653
Alias Chr04:28810795_28811428(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27020904-27021537  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014543
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA014543-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTACAACGAACCTACCATGAAGGCATGTGTGATATGAACACAGAATTCAACAGCAATTCCTAT
TGACATAACAAGGTTTACAATAGAAATTGCATTGAGcctgaatacagaagcccccatcgtcgat
agagcttgccttgcacggctttctctatttccaatgcctatctgcatctcaaagaatgtcatca
agggtttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAATACAGAAGCCCCCATCGTCGATAGAGCTTGCCTTGCACGGCTTTCTCTATTTCCAATG
CCTATCTGCATCTCAAAGAATGTCATCAAGGGTTTCAGAATGACAATGGAAAAGAACAGCTAAG
ACAGAGAAAGACACATTTGCAGCTAAGTAGGTTTACATTCAAACCTATTTCTATGGTTCTACTT
TATTGGGTAGAAGTATGAATTTAGTGCCAGGAGAATTGCTTTATCATTTTCGTAGCTCCAGTGT
CATACAGACTATCAAATTGAAGTTTAAAATGGTACAAAATCGAGGTGACTAGGAGCTGAAGTCT
TCAAGCTTATTACAAGTGCACACCACTAACGGTTTCTGTAGAAGTGGACTAAGTGTGGTACTTG
ATTCTCTGCCAAATCTTCCAAATACTATTTTCAAAACAAAACTAAGCACAGTAGTACTTAAAAA
AAAGCATCTTGACTAAGGGCAACACTTTCCAAATAATCACAGAACTCAGACATACTAAAATATA
TTTTAGAACTGGAAATTCCAAATTTACAACGAACCTACCATGAAGGCATGTGTGATATGAACAC
AGAATTCAACAGCAATTCCTATTGACATAACAAGGTTTACAATAGAAATTGCATTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021