Detail information of BGIOSGA024462_circ_g.1


General Information
CircRNA Name BGIOSGA024462_circ_g.1
ID in PlantcircBase osi_circ_016943
Alias Chr07:11338572_11338993(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 10989782-10990203  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA024462
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA024462-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTCAATTTGCTTCCTGAATAACTCTGACCAAAAGTCTTTGCAGATAAATTTGATTGCTTCA
AGATGATCACTAAATCGAGGGCGCTCCATAGTATATcatgctggaatgttggacatgtctgcag
tgacagaacaagaaatccccaaattggtcaaggcacctcttattatcccgcatggaaagtacag
aagcatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGCTGGAATGTTGGACATGTCTGCAGTGACAGAACAAGAAATCCCCAAATTGGTCAAGGCAC
CTCTTATTATCCCGCATGGAAAGTACAGAAGCATGCTTGTTGTTTGGGCTGCGCTATCACCTAG
TGTTGTAGAATCATTCTCAGTTGCACCCATGCTCTCTACAGATGGATCTACAGAAACACGAGTA
AGCCACCGGAAACGGTTATCTTGAAGAACAAATGTGCCCTGCATATACGGAAGTCAAGTAACAT
CAGTTTTTTCACAAGTGCAAAATAAGGTATGAATTTTACATTCATTACCCTATGATTAGTCTTC
AGATTGTCAATTTGCTTCCTGAATAACTCTGACCAAAAGTCTTTGCAGATAAATTTGATTGCTT
CAAGATGATCACTAAATCGAGGGCGCTCCATAGTATAT
Conservation Information
Conserved circRNAs osa_circ_033405 osa_circ_038519
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021