Detail information of BGIOSGA016638_circ_g.2


General Information
CircRNA Name BGIOSGA016638_circ_g.2
ID in PlantcircBase osi_circ_014474
Alias Chr04:24839378_24839523(ZS97RS2), Chr04:24830462_24830607(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22749503-22749648  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA016638
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTATTGTAGTATTTAAGTATCAAGTGTGTCACATTTTTGTGCTGCACAGTACAATATGCTTT
GTTGTACAGggttatttttgaaatcactaggacaatagttggtatctgtattctgttatgggtt
tatcagacataaaatagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTATTTTTGAAATCACTAGGACAATAGTTGGTATCTGTATTCTGTTATGGGTTTATCAGACA
TAAAATAGGCACTATTGTAGTATTTAAGTATCAAGTGTGTCACATTTTTGTGCTGCACAGTACA
ATATGCTTTGTTGTACAG
Conservation Information
Conserved circRNAs osa_circ_024291
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021