Plant Circular RNA Database

Detail information of Os08g0191700_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os08g0191700_circ_g.9
					
						ID in PlantcircBase
						osa_circ_036241
					
						Alias
						Os08circ04357
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 5375822-5376139  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os08g0191700						
					
						Parent gene annotation
						
							Glyoxalase I, Abiotic stress response (Os08t0191700-01);Glyoxala
se I, Splicing variant, Stress tolerance (Os08t0191700-02);Simil
ar to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (
Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) 
(S-D- lactoylglutathione methylglyoxal lyase). (Os08t0191700-03)
;Glyoxalase I, Splicing variant, Stress tolerance (Os08t0191700-
04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0191700_circ_g.6 Os08g0191700_circ_g.7 Os08g0191700_circ_g.8 Os08g0191700_circ_g.10 Os08g0191700_circ_g.11 						
					
						Support reads
						4
					
						Tissues
						leaf and panicle
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0191700-03:2
Os08t0191700-01:2
Os08t0191700-02:2
Os08t0191700-04:2

General Information
CircRNA Name	Os08g0191700_circ_g.9
ID in PlantcircBase	osa_circ_036241
Alias	Os08circ04357
Organism	Oryza sativa
Position	chr8: 5375822-5376139 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os08g0191700
Parent gene annotation	Glyoxalase I, Abiotic stress response (Os08t0191700-01);Glyoxala se I, Splicing variant, Stress tolerance (Os08t0191700-02);Simil ar to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) ( Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase). (Os08t0191700-03) ;Glyoxalase I, Splicing variant, Stress tolerance (Os08t0191700- 04)
Parent gene strand	-
Alternative splicing	Os08g0191700_circ_g.6 Os08g0191700_circ_g.7 Os08g0191700_circ_g.8 Os08g0191700_circ_g.10 Os08g0191700_circ_g.11
Support reads	4
Tissues	leaf and panicle
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0191700-03:2 Os08t0191700-01:2 Os08t0191700-02:2 Os08t0191700-04:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTCCTTCTTAGGCCACTCCAGCACAACCT
CAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTCtgtatgtcaattcaagtgcaaagttggt
gtcctcaggtccaaacccaagaaatgcattcgtatatttctcttcaggcacatctcttttcctc
agtaattt

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 246
Transcript exons: 5375822-5375946,5376019-5376139
TGTATGTCAATTCAAGTGCAAAGTTGGTGTCCTCAGGTCCAAACCCAAGAAATGCATTCGTATA
TTTCTCTTCAGGCACATCTCTTTTCCTCAGTAATTTCATTCCAAAGCATTCTGTGTAACATTTA
ATGGTGCGATCCAAATCTCCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTCCTTCTTAG
GCCACTCCAGCACAACCTCAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTC
						
						Genomic sequence
						
							TGTATGTCAATTCAAGTGCAAAGTTGGTGTCCTCAGGTCCAAACCCAAGAAATGCATTCGTATA
TTTCTCTTCAGGCACATCTCTTTTCCTCAGTAATTTCATTCCAAAGCATTCTGTGTAACATCTG
CCACAATCACATCATATTAACAGACATATACTAGGTGTGGGAAATATTACTTCTAGCACAAAAC
CATACTTAATGGTGCGATCCAAATCTCCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTC
CTTCTTAGGCCACTCCAGCACAACCTCAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTC

Sequences
Splice junction sequence	CCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTCCTTCTTAGGCCACTCCAGCACAACCT CAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTCtgtatgtcaattcaagtgcaaagttggt gtcctcaggtccaaacccaagaaatgcattcgtatatttctcttcaggcacatctcttttcctc agtaattt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 246 Transcript exons: 5375822-5375946,5376019-5376139 TGTATGTCAATTCAAGTGCAAAGTTGGTGTCCTCAGGTCCAAACCCAAGAAATGCATTCGTATA TTTCTCTTCAGGCACATCTCTTTTCCTCAGTAATTTCATTCCAAAGCATTCTGTGTAACATTTA ATGGTGCGATCCAAATCTCCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTCCTTCTTAG GCCACTCCAGCACAACCTCAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTC
Genomic sequence	TGTATGTCAATTCAAGTGCAAAGTTGGTGTCCTCAGGTCCAAACCCAAGAAATGCATTCGTATA TTTCTCTTCAGGCACATCTCTTTTCCTCAGTAATTTCATTCCAAAGCATTCTGTGTAACATCTG CCACAATCACATCATATTAACAGACATATACTAGGTGTGGGAAATATTACTTCTAGCACAAAAC CATACTTAATGGTGCGATCCAAATCTCCAACACGGTAAACAGCATGTAGAAGCCTCTTCTTGTC CTTCTTAGGCCACTCCAGCACAACCTCAGGTGACTTCTCAGCTTCACTACCGCTTGCCATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.288337788

Conservation Information
Conserved circRNAs	NA
PMCS	0.288337788

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os08g0191700_circ_g.9

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