Detail information of BGIOSGA001558_circ_g.13


General Information
CircRNA Name BGIOSGA001558_circ_g.13
ID in PlantcircBase osi_circ_009545
Alias Chr01:18521839_18523214(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19428607-19429982  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA001558
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCACAAACCGAATCCATTTCAATAGCACTCAGCACTACTGCGCAGTGCTACTAATCGAAGA
AATAGTCTGGCCATGGAGACCGCGACTTGAAGGTACctgaaaagagcatgaaatgaacatacag
aatgatcgatcacctagataacaagtagccaacagaaaaaaggaattgaatgtcccaaaaggtt
acaatcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAAGAGCATGAAATGAACATACAGAATGATCGATCACCTAGATAACAAGTAGCCAACAGA
AAAAAGGAATTGAATGTCCCAAAAGGTTACAATCGAACTTAGCAACTCATCAAAGCACAAACTA
TCTGATGATACCTGTTGCATGTCCCAACTTACAGAAAAGAAAAGCGCGGAAATACTCCCTCTGT
TTCAGGTTATAAGATGTTTTGGCTTTGGTCAAAGTCAAACTGCTTCAAGTTTGACTAAGTTTAT
AGACAAATATAGTAATAATATTTACATTACTAAATTATTTTTATTAAACTAATAATTAAATATA
TTTTTATAATAAATTTATCTTGTGTCGAAAATATTACTATTTTTTCTATAAACTTATTAGTCAA
ACTTGAAGCAGTTTGACTTTGACCAAAATCAAAATATCTTATAACCTGAAACGGAGGGAGTATC
ATGTTGGGACCCCAAGTGAATAGAATATGTATAATCAGATGTGATCCAACCATCTAAATAGGTT
TGGTCATTGCTGTTGTTTAGATATTGAGAGGCTGCTGTCAGCAATTCCCCAAAAATTTCTCTTA
CCACAGAAGATCGGGGCCAAGAATTTGGATATCATAATTCAAGGCATTTGTGTATTAGAATTCA
GAAATTGTCAAGAACATCATAGTGCATAATACTTGACTTGTTAATGCTTTACATAGTTTGTTGT
GCCACAGCAATGGTAGTTCCCCTTGTTCTCATGATAACATACGTAAGGCAGCATAGGTGGAACC
ATGCAGGCATTTGGACATAAAATGAGTACTGTACCAACTCACAAACATGAAAGTTTACAGCTAT
ACATGCACAACAATAAGATTATATATGCCTGCGTTTCGCAGCAGAATTTCCTATTGATGAATGC
TGGAACAGACATTATGCGGGCACCAAAATTCTGGAGTACAGATGTTTAGAAAGACAGACTAGCC
AGCATCAAATCCAACACAGACACTGTTGACATCCATCCTAGAGCATGGTACTGAATTCGGGATA
CAATACCTAATTATAGTAATACACAACATATTAGGCAGCACACCAATAACTTAGCATCAACAGT
AGAGAGATGGTGCAATGCATAAAAAATTGCATTAGTATCTAATAAATCATCTCCGCACCAATGG
AGCATGCGCAATCAATAAAAACATCAGAGCTTACAAGTTGCAACACGCTCAGTACATGTAACGG
CTTCTACATTTCATTTCTGATATTCAAGCTACATGCTAGCGGAATCCAATTGGAGCGAAACCAT
CACAAACCGAATCCATTTCAATAGCACTCAGCACTACTGCGCAGTGCTACTAATCGAAGAAATA
GTCTGGCCATGGAGACCGCGACTTGAAGGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021