Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019299_circ_g.1 |
ID in PlantcircBase | zma_circ_009250 |
Alias | zma_circ_0002705 |
Organism | Zea mays |
Position | chr7: 26619897-26629558 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d019299 |
Parent gene annotation |
Protein CIA1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019299_T007:7 Zm00001d019299_T002:7 Zm00001d019299_T005:7 Zm00001d019299_T008:8 Zm00001d019299_T001:7 Zm00001d019299_T004:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.095359706 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
26629375-26619897(+) 26629499-26619928(+) 26629485-26619899(-) 26619911-26629379(-) |
Potential amino acid sequence |
MSRIGCHCTILTSCVWPGSTETHSNSFPGSTSHIHTILSRLHVASSDPDGLHDTLFTSLSCP*( +) MWRAVTQTGSMTRSSPRCRAPEDTIAHSLCP*(+) MVWIWEVLPGNEFECVSVLPGHTQDVKMVQWHPILDILVSVSYDNSIRVWAGDGDDEWHCVQTL TEANNCGHSSTVWALSFNLKGDRMVTCSDDQTLKIWDTSADLSQPKTGEGHDSWQHLSTLTGYH GRTIFSAHWSSEDIIASGAGDDAICFFTEEKGSMVEKPSYRLILKKEKAHVMDINCVRWCPQGH DNEVKSVSWSPSGSLLATCSRDKMVWIWEVLPGNEFECVSVLPGHTQDVKMVQWHPILDILVSV SYDNSIRVWAGDGDDEWHCVQTLTEANNCGHSSTVWALSFNLKGDRMVTCSDDQTLKIWDTSAD LSQPKTGEGHDSWQHLSTLTGYHGRTIFSAHWSSEDIIASGAGDDAICFFTEEKGSMVEKPSYR LILKKEKAHVMDINCVRWCPQGHDNEVKSVSWSPSGSLLATCSRDKMVWIWEVLPGNEFECVSV LPGHTQDVKMVQWHPILDILVSVSYDNSIRVWAGDGDDEWHCVQTLTEANNCGHSSTVWALSFN LKGDRMVTCSDDQTLKIWDTSADLSQPKTGEGHDSWQHLSTLTGYHGRTIFSAHWSSEDIIASG AGDDAICFFTEEKGSMVEKPSYRLILKKEKAHVMDINCVRWCPQGHDNEVKSVSWSPSGSLLAT CSRDKMVWIWEVLPGNEFECVSVLPGHTQDVKMVQWHPILDILVSVSYDNSIRVWAGDGDDEWH CVQTLTEANNCGHSSTVWALSFNLKGDRMVTCSDDQTLKIWDTSADLSQPKTGEGHDSWQHLST LTGYHGRTIFSAHWSSEDIIASGAGDDAICFFTEEKGSMVEKPSYRLILKKEKAHVMDINCVRW CPQ(-) MVSSGARQRGEERVMEPVWVTARHMQPGQDGVDMGGAARERVRVCLGAAGPHAGRQDGAVAPNS *(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |