Detail information of 2_circ_ag.5


General Information
CircRNA Name 2_circ_ag.5
ID in PlantcircBase ath_circ_012468
Alias Ath_circ_FC5476
Organism Arabidpsis thaliana
Position chr2: 236613-240001  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ag.3 2_circ_ag.4 AT2G01520_circ_g.1
Support reads 16
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTTCCCCGATGCCATCGGCCACCACATCCAAGGTGTCACTGTCCACGACGGTGAATGGGACT
CTCATGAAGCCATCAAGATTTGGAACTATACATGCGatgggaaaccggaggtgttcaaggagag
gagagagatagacgatgagaatatggcggtaacgttcagaggactcgaaggtcacgtgatggag
cagcttaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 505
Transcript exons: 236613-236829,239714-240001
ATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATGGCGGTAACGTT
CAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTCATCTTTCAGTTCATT
CAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACA
TGCCTGAGCCCAGCAACTACATGAACACACTCTATATATAAACGAAGGAAGATCACACGTGAAA
ATAGTCATCAACCAAAGTAAGAAGCGCACACACACAACATATTTCTTTCACTACCCAAAGAGAT
GGCGACATCGGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCGGATAAACACTACAAG
CGGTGGAGAGATGAGAACCACCTCTTCCCCGATGCCATCGGCCACCACATCCAAGGTGTCACTG
TCCACGACGGTGAATGGGACTCTCATGAAGCCATCAAGATTTGGAACTATACATGCG

Transcript length: 540
Transcript exons: 236613-236839,239689-240001
ATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATGGCGGTAACGTT
CAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTCATCTTTCAGTTCATT
CAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACA
TGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGCATCTATTTTACGTCTAAACCGTTACACA
CTCTATATATAAACGAAGGAAGATCACACGTGAAAATAGTCATCAACCAAAGTAAGAAGCGCAC
ACACACAACATATTTCTTTCACTACCCAAAGAGATGGCGACATCGGGAACATATGTGACGGAGG
TTCCATTGAAAGGATCGGCGGATAAACACTACAAGCGGTGGAGAGATGAGAACCACCTCTTCCC
CGATGCCATCGGCCACCACATCCAAGGTGTCACTGTCCACGACGGTGAATGGGACTCTCATGAA
GCCATCAAGATTTGGAACTATACATGCG

Transcript length: 549
Transcript exons: 236613-236849,239690-240001
ATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATGGCGGTAACGTT
CAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTCATCTTTCAGTTCATT
CAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACA
TGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTCGCTGATCTATTTTACGTCTAAAC
CGTTACACACTCTATATATAAACGAAGGAAGATCACACGTGAAAATAGTCATCAACCAAAGTAA
GAAGCGCACACACACAACATATTTCTTTCACTACCCAAAGAGATGGCGACATCGGGAACATATG
TGACGGAGGTTCCATTGAAAGGATCGGCGGATAAACACTACAAGCGGTGGAGAGATGAGAACCA
CCTCTTCCCCGATGCCATCGGCCACCACATCCAAGGTGTCACTGTCCACGACGGTGAATGGGAC
TCTCATGAAGCCATCAAGATTTGGAACTATACATGCG

Genomic sequence ATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATGGCGGTAACGTT
CAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTCATCTTTCAGTTCATT
CAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACA
TGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTCGCTGCTGACATGGATGATCACGT
TCTCAAAGCCTAAATATCCCTTTCACATCAACCCATCATCACCTAATATCATGATCATCATCAC
CCTCATACGTACATTGCTCCTTTTGTGTGTGTGTGTGTGTATCGTTTTTATGGTGTTTTCAATA
TAATAAATGGGGGTTTACATGTATGGTTTCATCTACTATAATATGCTTTGATGTTGTTTATTAT
GGTTGAGGTTTCATGTATGCTCATCTACGCATGTATCCTTGTTAATTAATGATTTTCAAGAGTT
ATCAATCAATACTGCCCTTTTTTAAAGTGTTGCACTACGTATGTATCAGCTTCCACAAGCTCAC
ATTGTATACAGCATTTGTGGTTGTATTATTCATCATTTTGTACGTTCAATTATGGTTATTATTC
ATACACAGTATTCATTATATTTATAGTGGTTGTATAGTATATTTAGTTGCTGTTGCTGTCTTTG
TATGTTCATTTAGTGTATAGTAATTAATGCTGACTTTATAAGTTCATATAGTGGTTGTAACATT
TATCATTTCTATGAGTATATATTATTACTCATGTCCTCCGAAATTGGACAACATTTAAACGATA
CAAGCAAGGAAGACAATAAAAATACAAAAATATTTCCTTCGAAACTCTAGTAAAGAAAGCATAT
AATGAAACCAGCATTTAGCAAAGATGAGGGGTCTATGTGGGATGGGGGTCTTGTTGGTTCAATG
ATGTAAAAAATCATTACGATTTGTTTTAAGGCTATTGTTTTTAATGGGTTGATATATGAATGAC
GAGGACAATGGTCATGTATATGGATTTTGTCAAACCTACTAATTAGAATTGTGTTGTATGATAA
GAACTTGGAAAACGTGAATTATGTATGGTATACAGCACAATCGCAAGTATCAGTAAATATCTAT
TAATCTAACATATAAATTTTGAGTTTATATGATTCTATATATCTTTGTAAATAAATAATGTTTA
TGCTGTGCTTGACAAAAAAAATGATTATGTGTACGTACGTATGCTAAGAGATGATCAAAATTAT
AACTAGAGACATTATTAGAGCAAAGTACCAGATAAGACTTTTAAAGATATTTGGAATATTATAT
GAAATATGAAAGTATCAGTTTAATAAATACTAAATGTAGAAAAATTACAATCGTGACAGTTAGC
TTAACTCAAACTTTATACTAAAAACTATCTATACTATTAATTGGGAATCATCGGAAAATTTACA
ACCTTTTGAAACCCGCACGTATGTGCGGGTCAGGATCTAGTGATTCTTTAAATTTGGAAACTCG
AATATCTCAAACGATATTAATTATTCAGGATATTGATATTACATGGATGGATCATGGAAATAAA
GCGACAAATTGTTTGGAGCAGAATGGTACTATACATCATCAAATGGAGAGACGTCAACCATGAG
AACTGCAAATCTTTAAGAAGTCTATCCTCACTACATGCAGAAGTGGAAGCGCTTCTCTGATGAT
GAGGTGTATGATTGGCGCTAACAATCAAGACGTAGCTTTTCTAATAGACTATTCAGATCAGGTG
AAGATGGTGTCTTTCCTAACCGAATGACCAGCCTTCTCAGTGTATTTGGAGGATTTGAAAAACG
ACAATGAAGAATTTAAAAGTTTTCTTTTATCTTTAAATTTTAGTACAAATGTTAAAGCGGATAA
TTTGGCACGAAAAGTTCTATACCAAATCACATCATATCACATATGCAAACAACATTCTTCGGGA
ATGGATCTTTAATTTGAGTTCTAACTAATATCGGTTGACAAAAGAAAAAAGTTTAGAAATAATA
TTATCTCATTTAAACTAGATACATAAATGAAACAACAACACACCCATACACACAAAAAGCGACT
CTATTTTGTTAAATAGATGAAGAGCCTCCTCTAGAAGATGAAGTGATATCTCTAGAACCAGCAC
TTTCAACCTAGCCACATAGTGATGGATTGATTAAGGACAACACCTCAGAAAAAGACTTGTCTAT
GCCATGTATACTTTCGCTAAGAAGTAAGAAGGGAGTGATTTGGCGCCAGGTAATTGCAATGTTT
GAAGCGGTCTTTTTGGGGGTCTAGCTACTTCATCCTTCCAACTGTAGCTATCTTGAGTCTCAGG
GAAGATCATAACCATTGTGAGCTTGTAGAAAAAGGCTTCTACATTGTCACTGTGGGCACTCGTG
AACTGCCAGCCAATTTTAGAGGTCTATATAGAATCTTTTTTATCAAGAAAATGTGTATAACATA
TAAGAGCACCCTCAATAGTGTATCTTAGCAAAATCTTAGGATTAAAAGCAATTAAAATAAAGCA
AACCAACAATCCAAAGCTAAGAAGTGTATTTTTCTTTAGATGTTTTTCTTAAGTTAAGATGTTT
TTCTTAAGTTAAGATGTTTATATGTGTTATTTGATGATTGGTTTAAAAAATGAACAAAAATAGA
AGATATTGTTTTAGAAAAAATGAACAAAATAGAAGATATTGTTTTAAAAATATCAATGAAAGTC
ACAGCTGGCAGGAAATCTACGGTATCGTTATCTGGTGGACTTTTCGGCATTCAAGGAACAATAC
ATCATATCAACAAACAATAATTATGGTTTGTTTAAGGTTTAAATTAAAATTGATGTATGCATTT
GTCTACTCTAATCCTTATCATTGATTCATTATATGCTTCTTTTTTTGTTGGTAAAACCATTATA
TGCATTTTGTCAAACCTATCCTTATCTTAATAACAAACAAAATACATTGTATGATAAGAACTTG
GACAACGTGAAATATGACTCATTCTAAATATATTAGCAGTAGATATCAAATAAGTATAAAACCC
GGCTCATCTATTTTACGTCTAAACCGTTACACACTCTATATATAAACGAAGGAAGATCACACGT
GAAAATAGTCATCAACCAAAGTAAGAAGCGCACACACACAACATATTTCTTTCACTACCCAAAG
AGATGGCGACATCGGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCGGATAAACACTA
CAAGCGGTGGAGAGATGAGAACCACCTCTTCCCCGATGCCATCGGCCACCACATCCAAGGTGTC
ACTGTCCACGACGGTGAATGGGACTCTCATGAAGCCATCAAGATTTGGAACTATACATGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.577947022
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a